Jatropha Genome Database

JcCB0588921.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0588921.10 - phase: 0 /pseudo/partial
         (179 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28320.m001106 hypothetical protein                                    184   3e-47

>28320.m001106 hypothetical protein
          Length = 407

 Score =  184 bits (466), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 88/114 (77%), Positives = 94/114 (82%)

Query: 66  RLQQNWKVKRQRVAAIAPGNEGFTIDLFDNSLYDSASLFRPTSLSTIRIDHDSAGMLAID 125
           RLQQNWKVKRQR+AA A  NEGFTIDLFDNSLYDSASLFRP SLSTIRIDHDSAGMLAI+
Sbjct: 133 RLQQNWKVKRQRMAATALSNEGFTIDLFDNSLYDSASLFRPPSLSTIRIDHDSAGMLAIN 192

Query: 126 LPPKSCRSLHFGFLGVHSNEDVXXXXXXXXXXXVEHPSKETEKESASDNESIKE 179
           LPP SCRSLHFGFLGVHSN+++           VEH SKE EKES SDNE +KE
Sbjct: 193 LPPSSCRSLHFGFLGVHSNDNIKKCTKIKSSCSVEHSSKEAEKESLSDNECVKE 246