Jatropha Genome Database

JcCB0585631.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0585631.10 + phase: 2 /TE/partial
         (322 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

27758.m000324 dead box ATP-dependent RNA helicase, putative           193   9e-50
30076.m004639 hypothetical protein                                     67   1e-11
28694.m000678 dead box ATP-dependent RNA helicase, putative            52   3e-07

>27758.m000324 dead box ATP-dependent RNA helicase, putative
          Length = 1173

 Score =  193 bits (490), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 103/148 (69%), Positives = 108/148 (72%), Gaps = 1/148 (0%)

Query: 175 FMNSMVLPEVEKLNNATITQSFDGXXXXXXXXXXXXRINGDQLKKSSTKSLGRIIPGEDS 234
           FMNSMVLPEVEKLNNA IT++ D                  +LKK S KSLGRIIPGEDS
Sbjct: 382 FMNSMVLPEVEKLNNAVITETVDENKVELKKKKEEGNEGE-KLKKGSNKSLGRIIPGEDS 440

Query: 235 DSEFVXXXXXXXXXXXXXXXXFMKRVKKTKAEKLSVVDHSKIDYKPFRKNFYIEVKEISR 294
           DS++                 FMKRVKKTKAEKLSVVDHSKIDYKPFRKNFYIEVKEISR
Sbjct: 441 DSDYGDLENDEGPLDDEDDDEFMKRVKKTKAEKLSVVDHSKIDYKPFRKNFYIEVKEISR 500

Query: 295 MTPEEVAAYRKQLELKIHGKDVPKPVKT 322
           M PEEVAAYRKQLELKIHGKDVPKPVKT
Sbjct: 501 MAPEEVAAYRKQLELKIHGKDVPKPVKT 528


>30076.m004639 hypothetical protein
          Length = 791

 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 44/63 (69%)

Query: 260 VKKTKAEKLSVVDHSKIDYKPFRKNFYIEVKEISRMTPEEVAAYRKQLELKIHGKDVPKP 319
           + + K E +  +DHS IDY+PF K+FY E   IS M+ ++VA YRK L +++ G DVP+P
Sbjct: 163 LDRKKIEPIPPLDHSLIDYEPFNKDFYEEKPSISGMSEQDVAEYRKSLAIRVSGFDVPRP 222

Query: 320 VKT 322
           +K+
Sbjct: 223 IKS 225


>28694.m000678 dead box ATP-dependent RNA helicase, putative
          Length = 505

 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 21/43 (48%), Positives = 31/43 (72%)

Query: 280 PFRKNFYIEVKEISRMTPEEVAAYRKQLELKIHGKDVPKPVKT 322
           PF KNFY+E   ++ M+  EV  YR++ E+ + G+DVPKPVK+
Sbjct: 58  PFEKNFYVESPSVAAMSEREVEEYRQRREITVEGRDVPKPVKS 100