Jatropha Genome Database

JcCB0584071.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0584071.10 - phase: 1 /pseudo/partial
         (304 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29983.m003121 nucleic acid binding protein, putative                  257   5e-69
30078.m002347 nucleic acid binding protein, putative                   56   2e-08
29780.m001362 nucleic acid binding protein, putative                   55   4e-08
29780.m001361 zinc finger protein, putative                            55   4e-08
29643.m000323 nucleic acid binding protein, putative                   50   9e-07
30170.m014220 nucleic acid binding protein, putative                   50   2e-06
28694.m000662 nucleic acid binding protein, putative                   49   3e-06
29794.m003304 nucleic acid binding protein, putative                   49   3e-06
29647.m001996 nucleic acid binding protein, putative                   49   4e-06
30128.m008805 nucleic acid binding protein, putative                   48   5e-06

>29983.m003121 nucleic acid binding protein, putative
          Length = 437

 Score =  257 bits (657), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 170/294 (57%), Positives = 193/294 (65%), Gaps = 42/294 (14%)

Query: 29  RRDSFITHRAFCDALAEETARVNAATSINSLAAST-NFNYHLMGAPIGPNNMAQHFSSIF 87
           RRDSFITHRAFCDALAEETARVNAA++IN LAA+  NFNYHLMGAPIGP NMAQHFSSIF
Sbjct: 119 RRDSFITHRAFCDALAEETARVNAASNINGLAATANNFNYHLMGAPIGP-NMAQHFSSIF 177

Query: 88  KPISSSNDQQTIDQTRRGLPLWVSQGPQGHEAIINNSIQEIHRQLGSLTSSGTIFGQDPL 147
           KPI S+ND  T+DQTRRGL LW+S   Q HE I     QEIH QLGS+ SSG IF  DPL
Sbjct: 178 KPIPSNND-HTMDQTRRGLSLWMS---QSHEPI----AQEIH-QLGSMGSSGAIFHHDPL 228

Query: 148 -----VSSSDQYHQINWPKIFGNNKQISSNNVHQEELTSTT-SLPLNE-----AAVQLAS 196
                 SS   YH ++WP IFG +K  S+N  H EELTSTT SLPLN      AAVQL S
Sbjct: 229 NNSCSNSSPTDYH-LSWP-IFG-SKLSSTNAHHHEELTSTTSSLPLNNVKEAAAAVQLVS 285

Query: 197 VPSLYSGXXXXXXXXXXXXXXXXXXXXLLQKAAQIGATSTDPSFLGSFGLKCSSNG---Q 253
           VPSLYS                     LLQKAAQIGATSTDP+FLGSFGLK S+N    Q
Sbjct: 286 VPSLYS---TQQQPNQTAPSANMSATALLQKAAQIGATSTDPTFLGSFGLKSSTNNSQVQ 342

Query: 254 IQEGNKFCGL-YGANNLDLDLVLDHQMQMFPATKTAKSND--RMNQKALYVGGG 304
            Q  NKFCGL YG+N    +++    ++         +ND  R+NQ  +Y+  G
Sbjct: 343 DQGSNKFCGLIYGSNPTITNIIASDHVE--------NNNDISRLNQLQMYMPSG 388


>30078.m002347 nucleic acid binding protein, putative
          Length = 525

 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 105/230 (45%), Gaps = 39/230 (16%)

Query: 29  RRDSFITHRAFCDALAEETARVNAATSINSLAASTNFNYHL-MGAP-IGPNNMA---QHF 83
           R+DSFITHRAFCDALAEE+AR N+A   N    + N   +L  GAP  G  ++A   Q  
Sbjct: 183 RKDSFITHRAFCDALAEESARFNSAPPANLNFRNENSVVNLPHGAPGHGVQDIASISQFS 242

Query: 84  SSIFKPISSSNDQQTIDQTR-RGLPLWVSQ-----GPQGHEAIINNSIQEIHRQLGSLTS 137
           +S F+   ++    + DQ +  GL LW++Q      P   + + NNS         SL +
Sbjct: 243 TSTFRSDVNAMTCVSSDQQKPAGLSLWLNQVNSHMNPA--DTVANNS---------SLYA 291

Query: 138 SGTIFGQDPLVSSSDQYHQINWPKIFGNNKQISSNNVHQEELTSTTSLPLNEAAVQLA-- 195
           S    G   +V       QI    ++G++   +  N+    L     L   E   +    
Sbjct: 292 SSNSTGLPEMV-------QIGSSNLYGSSSATNFGNLTLSGLPH--GLKEEEGGDKRTNM 342

Query: 196 --SVPSLYSGXXXXXXXXXXXXXXXXXXXXLLQKAAQIGAT-STDPSFLG 242
             S+PSLYS                     LLQKAAQ+G+T S++ SF G
Sbjct: 343 TDSLPSLYS---DNHQNKQSKPVAPMSATALLQKAAQMGSTRSSNQSFFG 389


>29780.m001362 nucleic acid binding protein, putative
          Length = 589

 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 33/68 (48%), Positives = 43/68 (63%), Gaps = 11/68 (16%)

Query: 29  RRDSFITHRAFCDALAEETARVNAATSINSLAASTNFNYHLMGAPIGPNNMAQHFSSIFK 88
           RRDSFITHRAFCDALA+E+AR N  T++N++ +      HL G     +NM+   S +  
Sbjct: 185 RRDSFITHRAFCDALAQESAR-NPPTNLNTIGS------HLYGG----SNMSLGLSQVNT 233

Query: 89  PISSSNDQ 96
            ISS  DQ
Sbjct: 234 QISSMQDQ 241


>29780.m001361 zinc finger protein, putative
          Length = 571

 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 33/68 (48%), Positives = 42/68 (61%), Gaps = 12/68 (17%)

Query: 29  RRDSFITHRAFCDALAEETARVNAATSINSLAASTNFNYHLMGAPIGPNNMAQHFSSIFK 88
           RRDSFITHRAFCDALA+E+AR    T +N++ +      HL G     N+M+   S +  
Sbjct: 193 RRDSFITHRAFCDALAQESAR--HPTGLNTIGS------HLYGN----NHMSLGLSQVGS 240

Query: 89  PISSSNDQ 96
           PISS  DQ
Sbjct: 241 PISSLQDQ 248


>29643.m000323 nucleic acid binding protein, putative
          Length = 543

 Score = 50.4 bits (119), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 50/95 (52%), Gaps = 14/95 (14%)

Query: 29  RRDSFITHRAFCDALAEETAR---VNAATSINSLAASTN-FNYHLMGAPIGPNNMAQHFS 84
           R+DSFITHRAFCDALAEE+ R   V+AA + N      N  N   +  P     +   FS
Sbjct: 177 RKDSFITHRAFCDALAEESGRFTPVSAAINANLRNDLINGANSINLPPPHHQTTVISQFS 236

Query: 85  SIFKP---------ISSSNDQQTIDQTRRGLPLWV 110
           S+F+P         +  SN+   +D  +  LP+W+
Sbjct: 237 SVFRPEFGTTTASELLGSNN-LGVDVQKPRLPIWL 270


>30170.m014220 nucleic acid binding protein, putative
          Length = 502

 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/26 (80%), Positives = 22/26 (84%)

Query: 29  RRDSFITHRAFCDALAEETARVNAAT 54
           RRDSFITHRAFCDALAEE+AR    T
Sbjct: 181 RRDSFITHRAFCDALAEESARAQTLT 206


>28694.m000662 nucleic acid binding protein, putative
          Length = 552

 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 20/22 (90%), Positives = 21/22 (95%)

Query: 29  RRDSFITHRAFCDALAEETARV 50
           RRDSFITHRAFCDALAEE+AR 
Sbjct: 201 RRDSFITHRAFCDALAEESARA 222


>29794.m003304 nucleic acid binding protein, putative
          Length = 446

 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/31 (74%), Positives = 26/31 (83%), Gaps = 3/31 (9%)

Query: 29  RRDSFITHRAFCDALAEETARVNAATSINSL 59
           RRDSFITHRAFCDALAEE+AR   A ++N L
Sbjct: 138 RRDSFITHRAFCDALAEESAR---AITLNPL 165


>29647.m001996 nucleic acid binding protein, putative
          Length = 631

 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 20/23 (86%), Positives = 21/23 (91%)

Query: 29  RRDSFITHRAFCDALAEETARVN 51
           RRDSFITHRAFCDALAEE  +VN
Sbjct: 255 RRDSFITHRAFCDALAEENNKVN 277


>30128.m008805 nucleic acid binding protein, putative
          Length = 513

 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 24/47 (51%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 29  RRDSFITHRAFCDALAEETARVNAATSINSLAASTNFNY-HLMGAPI 74
           RRDSFITHRAFCDAL EE  + N   + N++  S      +LM  PI
Sbjct: 211 RRDSFITHRAFCDALTEENNKGNQGLAPNNIGQSLQVQVTNLMSMPI 257