Jatropha Genome Database

JcCB0582451.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0582451.10 + phase: 1 /partial
         (229 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29822.m003338 protein farnesyltransferase beta subunit, putative      381   e-106
29887.m000232 geranylgeranyl transferase type I beta subunit, pu...    67   1e-11
28098.m000129 geranylgeranyl transferase type II beta subunit, p...    62   3e-10
29701.m000593 geranylgeranyl transferase type II beta subunit, p...    59   2e-09

>29822.m003338 protein farnesyltransferase beta subunit, putative
          Length = 438

 Score =  381 bits (978), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 181/225 (80%), Positives = 199/225 (88%)

Query: 5   TEGGSIAGEPGSEAHVGYTFCGLAAMVLINEVNRLDMARLIDWVVFRQGVECGFQGRTNK 64
           T  G IAGEPGSEAH GYTFCGLA M+LINEVNRLD++ LI+WVVFRQGVECGFQGRTNK
Sbjct: 209 TYEGGIAGEPGSEAHGGYTFCGLATMILINEVNRLDLSSLINWVVFRQGVECGFQGRTNK 268

Query: 65  LVDGCYSFWQGGVFAILQRLRSVSGEGVAFSDAEAGDYATDSTSEGEVTNGNSSEADEPD 124
           LVDGCYSFWQGGVFA+LQRLRS+ GE  AFSDAEAG  AT+S+SE E T+G+S++ DEP 
Sbjct: 269 LVDGCYSFWQGGVFALLQRLRSIGGEHAAFSDAEAGHCATESSSEDEGTDGDSTDVDEPG 328

Query: 125 HFKQGDHGEMVPPFHSMALQQYILLCSQEQDGGFRDKPGKARDFYHTCYCLSGLSVCQYS 184
           HFKQG HG  VP FHS ALQQYI+LCSQEQ+GGFRDKPGKARD+YHTCYCLSGLSVCQYS
Sbjct: 329 HFKQGGHGVTVPLFHSSALQQYIILCSQEQEGGFRDKPGKARDYYHTCYCLSGLSVCQYS 388

Query: 185 WSKDEHSPPPTRAVLGPYSNLLEPVHPLYNVVLKQYHEARDFFSS 229
           WSKDE+SPP  RAVLGPYSNLLEP+HPLYNVV KQY  A +FFSS
Sbjct: 389 WSKDENSPPLPRAVLGPYSNLLEPIHPLYNVVSKQYDGAHEFFSS 433


>29887.m000232 geranylgeranyl transferase type I beta subunit,
           putative
          Length = 370

 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 73/179 (40%), Gaps = 63/179 (35%)

Query: 15  GSEAHVGYTFCGLAAMVLINEVNR-----------LDMARLIDWVVFRQGVECGFQGRTN 63
           GSE+H G TFC +A++ L+  ++            +D+  L++W + RQ  + GFQGR N
Sbjct: 223 GSESHGGGTFCAVASLRLMGFIDDDLLSKDEPPSIIDVPLLLEWCLKRQAADGGFQGRLN 282

Query: 64  KLVDGCYSFWQGGVFAILQRLRSVSGEGVAFSDAEAGDYATDSTSEGEVTNGNSSEADEP 123
           K  D CY+FW G V  IL   + + G+                                 
Sbjct: 283 KPTDTCYAFWVGAVLRILGGYKFIDGK--------------------------------- 309

Query: 124 DHFKQGDHGEMVPPFHSMALQQYILLCSQEQDGGFRDKPGKARDFYHTCYCLSGLSVCQ 182
                             AL+ +++ C Q + GGF   PG+  D YH+ Y  +  S+ +
Sbjct: 310 ------------------ALRGFLITC-QSKYGGFSKFPGELPDIYHSYYGYTAFSLLE 349


>28098.m000129 geranylgeranyl transferase type II beta subunit,
           putative
          Length = 280

 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 66/176 (37%), Gaps = 51/176 (28%)

Query: 8   GSIAGEPGSEAHVGYTFCGLAAMVLINEVNRLDMARLIDWVVFRQGVECGFQGRTNKLVD 67
           G     PG E+H G  FC + A+ +   ++ +D   L  W+  RQ    G  GR  KL D
Sbjct: 126 GGFGCSPGGESHAGQIFCCVGALAITGSLHHVDKDLLGWWLCERQVKSGGLNGRPEKLPD 185

Query: 68  GCYSFWQGGVFAILQRLRSVSGEGVAFSDAEAGDYATDSTSEGEVTNGNSSEADEPDHFK 127
            CYS+W      ++ R+  ++ E                                     
Sbjct: 186 VCYSWWVLSSLIMIDRVHWINKE------------------------------------- 208

Query: 128 QGDHGEMVPPFHSMALQQYILLCSQEQDGGFRDKPGKARDFYHTCYCLSGLSVCQY 183
                          L ++IL C   ++GG  D+P  A D +HT + ++GLS+  Y
Sbjct: 209 --------------KLVKFILSCQDTENGGISDRPDDAVDVFHTYFGVAGLSLLGY 250


>29701.m000593 geranylgeranyl transferase type II beta subunit,
           putative
          Length = 306

 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 63/171 (36%), Gaps = 51/171 (29%)

Query: 8   GSIAGEPGSEAHVGYTFCGLAAMVLINEVNRLDMARLIDWVVFRQGVECGFQGRTNKLVD 67
           G     PG E+H G  FC + A+ +   ++ +D   L  W+  RQ    G  GR  KL D
Sbjct: 165 GGFGSSPGGESHAGQIFCCVGALAITGSLHHVDKDLLGWWLCERQVKSGGLNGRPEKLPD 224

Query: 68  GCYSFWQGGVFAILQRLRSVSGEGVAFSDAEAGDYATDSTSEGEVTNGNSSEADEPDHFK 127
            CYS+W      ++ R+  +S E                                     
Sbjct: 225 VCYSWWVLSSLIMIDRVHWISKE------------------------------------- 247

Query: 128 QGDHGEMVPPFHSMALQQYILLCSQEQDGGFRDKPGKARDFYHTCYCLSGL 178
                          L ++IL C   ++GG  D+P  A D +HT + ++G+
Sbjct: 248 --------------KLVKFILNCQDTENGGISDRPDDAVDVFHTYFGVAGI 284