Jatropha Genome Database

JcCB0580221.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0580221.10 + phase: 0 
         (199 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29889.m003326 conserved hypothetical protein                          154   2e-38
30076.m004619 conserved hypothetical protein                           66   9e-12

>29889.m003326 conserved hypothetical protein
          Length = 244

 Score =  154 bits (390), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 95/182 (52%), Positives = 115/182 (63%), Gaps = 5/182 (2%)

Query: 1   MDY---KDGDFDVDLENGLRVNAEDPHKDYISVVKIQAKELLGKIYGVFVDGTINDEEGL 57
           MD+   ++ DF++DLENGL ++ +D  KD +  VK QAKELL KI  +FVD TI  E G+
Sbjct: 1   MDHIAPQERDFEIDLENGLNISTQDTSKDSVDSVKTQAKELLTKICSIFVDDTIKGELGI 60

Query: 58  NLCHNAPSSNGVSVEQVKLEGEKTVDHXXXXXXXXXXXXXXX--XXXXXPPRPPTGPTLD 115
           NL H+AP+SNG+ VEQ+KLEGEK +DH                      PPRPP GP+LD
Sbjct: 61  NLSHDAPNSNGIPVEQLKLEGEKAIDHAVAEKKVVKEKRKKMGHKKSPKPPRPPRGPSLD 120

Query: 116 AADQKLIKELTELAMLKRAKVERXXXXXXXXXXXXXXXXXXTIAMVFTVLFCLVIVFQGN 175
           AADQKLIKE+TELAMLKRA+VER                    AMVFT LFCLVI+FQG 
Sbjct: 121 AADQKLIKEITELAMLKRARVERMKALKKMKAAKGSPSNGNIFAMVFTALFCLVIIFQGM 180

Query: 176 SS 177
           SS
Sbjct: 181 SS 182


>30076.m004619 conserved hypothetical protein
          Length = 252

 Score = 66.2 bits (160), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 92/180 (51%), Gaps = 8/180 (4%)

Query: 1   MDY---KDGDFDVDLENGLRVNAEDPHKDYISVVKIQAKELLGKIYG--VFVDGTINDEE 55
           MD+   ++ + ++D+E+G   + ED   D IS  K Q+++LL  ++   +  DG +N  +
Sbjct: 14  MDHLVSRERELEIDIESGGTTSEEDGLHDLISTNK-QSEKLLNSVWSGRLGFDGLVNSSK 72

Query: 56  GLNLCH-NAPSSNGVSVEQVKLEGEKTVDHXXXXXXXXXXXXXXXXXXXXPPRPPTGPTL 114
             ++ + N     G ++E  K   ++ +                      PPRPP GP+L
Sbjct: 73  FGDIANENVELLLGKNIEG-KEGQQQNMGFGNKKVVEDKHKKKNSRKAPKPPRPPKGPSL 131

Query: 115 DAADQKLIKELTELAMLKRAKVERXXXXXXXXXXXXXXXXXXTIAMVFTVLFCLVIVFQG 174
           DAADQKL++E+TELAM KRA++ER                    AM+ T LFCLV++FQG
Sbjct: 132 DAADQKLVQEITELAMRKRARMERIKALKKMRAAKSSSWNSSVYAMIITFLFCLVLIFQG 191