Jatropha Genome Database

JcCB0580021.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0580021.20 - phase: 1 /partial
         (67 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29646.m001077 ketol-acid reductoisomerase, chloroplast precursor...   132   5e-32
29900.m001612 ketol-acid reductoisomerase, chloroplast precursor...   130   2e-31

>29646.m001077 ketol-acid reductoisomerase, chloroplast precursor,
           putative
          Length = 584

 Score =  132 bits (331), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 60/67 (89%), Positives = 63/67 (94%)

Query: 1   RFDYILTQQAFVAVDNGAPVNRDLISNFLSDPVHGAIEVCAQLRPTLDISVPPDADFVRP 60
           RFDYILTQQA V+VDNG PV  DLISNF+SDPVHGAIEVCAQLRPT+DISVPPDADFVRP
Sbjct: 518 RFDYILTQQAMVSVDNGTPVKCDLISNFMSDPVHGAIEVCAQLRPTVDISVPPDADFVRP 577

Query: 61  ELRQSSN 67
           ELRQSSN
Sbjct: 578 ELRQSSN 584


>29900.m001612 ketol-acid reductoisomerase, chloroplast precursor,
           putative
          Length = 594

 Score =  130 bits (326), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 59/67 (88%), Positives = 63/67 (94%)

Query: 1   RFDYILTQQAFVAVDNGAPVNRDLISNFLSDPVHGAIEVCAQLRPTLDISVPPDADFVRP 60
           RFDYILTQQAFVAVD G  +N+DLISNF+SDPVHGAIEVCAQLRPT+DISVPPDADFVRP
Sbjct: 528 RFDYILTQQAFVAVDAGTSINQDLISNFMSDPVHGAIEVCAQLRPTVDISVPPDADFVRP 587

Query: 61  ELRQSSN 67
           ELRQS N
Sbjct: 588 ELRQSGN 594