Jatropha Genome Database

JcCB0580021.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0580021.10 + phase: 1 /partial
         (112 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29646.m001075 splicing factor u2af large subunit, putative             87   2e-18
30075.m001186 DNA-damage repair protein drt111, putative               54   2e-08

>29646.m001075 splicing factor u2af large subunit, putative
          Length = 549

 Score = 86.7 bits (213), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 40/44 (90%), Positives = 42/44 (95%)

Query: 1   QRLMLQPLPTKVVCLTQVVNPDELKDDEEYEDILEDMRTEGGKF 44
           QRLMLQP+PTKVVCLTQVV  DELKDD+EYEDILEDMRTEGGKF
Sbjct: 477 QRLMLQPVPTKVVCLTQVVTADELKDDDEYEDILEDMRTEGGKF 520


>30075.m001186 DNA-damage repair protein drt111, putative
          Length = 387

 Score = 53.5 bits (127), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 60/105 (57%), Gaps = 13/105 (12%)

Query: 9   PTKVVCLTQVVNPDELKDDEEYEDILEDMRTEGGKFGTLVNVVI---PRPN-ADSEALPG 64
           PT+V+ L  +V P E+  D+E ED   ++ +E  K+GT+  V+I     PN    EA+  
Sbjct: 281 PTRVLLLRNMVGPGEV--DDELED---EVGSECAKYGTVTRVLIFEITEPNFPRDEAV-- 333

Query: 65  VGKVFLEYADIEGATKARAGMNGRKFGGNQVVAVYFPENKFYQGE 109
             ++F+++   E  TKA   ++GR FGGN V A ++ E KF + E
Sbjct: 334 --RIFVQFERSEETTKALVDLDGRFFGGNVVHATFYDEEKFSKNE 376