Jatropha Genome Database

JcCB0579481.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0579481.10 - phase: 2 /partial
         (63 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29647.m002079 ribosome recycling factor, putative                      70   2e-13

>29647.m002079 ribosome recycling factor, putative
          Length = 247

 Score = 70.1 bits (170), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/58 (62%), Positives = 43/58 (74%)

Query: 1   LKVIEKAIVNSDLGLTPSNDGEVIRLSIPQLTSDRRKVFPLFFFWDLASGSLSNRSLR 58
           LK IEKAIV+SDLGLTP+NDGEVIRLSIPQLTS+RRK            G ++ R++R
Sbjct: 152 LKSIEKAIVSSDLGLTPNNDGEVIRLSIPQLTSERRKEMSKMVAKLAEEGKVALRNIR 209