Jatropha Genome Database

JcCB0578941.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0578941.10 - phase: 1 /pseudo/partial
         (187 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29962.m000052 conserved hypothetical protein                          153   5e-38
29653.m000290 conserved hypothetical protein                           86   7e-18

>29962.m000052 conserved hypothetical protein
          Length = 374

 Score =  153 bits (386), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 85/147 (57%), Positives = 98/147 (66%), Gaps = 2/147 (1%)

Query: 42  FIAGTVNVYDDISPEKAQAILFLAGNGSSISSNMAQPKIQVQAPSSKPIATDISPVSQXX 101
           F  GTVNVYDDISPEKAQAI+FLAGNG SI SNM+QPKIQVQAP+SK +AT +SPV+Q  
Sbjct: 205 FYGGTVNVYDDISPEKAQAIMFLAGNGFSIPSNMSQPKIQVQAPNSKAVATVVSPVNQPV 264

Query: 102 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEILTAKSTGT-TTPVSKLESPRIASTMGSV 160
                                        EEI+  K +G  TTPVSK ++P++AS MGS 
Sbjct: 265 ITPPCSRLSSPLSVSSHTGAQSGSGSTSTEEIVAVKPSGVPTTPVSKPDTPKLASAMGSA 324

Query: 161 AATTMIPSAVPQARKASLARFLEKRKE 187
            A  M+PS VPQARKASLARFLEKRKE
Sbjct: 325 PAAIMMPS-VPQARKASLARFLEKRKE 350


>29653.m000290 conserved hypothetical protein
          Length = 258

 Score = 86.3 bits (212), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 57/147 (38%), Positives = 76/147 (51%), Gaps = 11/147 (7%)

Query: 42  FIAGTVNVYDDISPEKAQAILFLAGNGSSISSNMAQPKIQVQAPSSKPIATDISPVSQXX 101
           F  G+V VYDDISPEKAQA++ LAG+GSS++ N      QVQAP ++  A D        
Sbjct: 84  FYGGSVCVYDDISPEKAQAMMLLAGHGSSVTQNKMFSTAQVQAPITRASAGD-------- 135

Query: 102 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEILTAKSTGT-TTPVSKLESPRIASTMGSV 160
                                         E+   +S G   +  ++ E+PR  +++G  
Sbjct: 136 --GYIENKVHTTSPCSGLPSPISVTSSSPNELAAVRSVGALASGSNQTETPRAITSVGPG 193

Query: 161 AATTMIPSAVPQARKASLARFLEKRKE 187
           +AT +   AVPQARKASLARFLEKRKE
Sbjct: 194 SATLIPAVAVPQARKASLARFLEKRKE 220