Jatropha Genome Database

JcCB0574131.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0574131.10 - phase: 2 /partial
         (132 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30131.m007163 Transcription factor HBP-1b(c1), putative               198   5e-52

>30131.m007163 Transcription factor HBP-1b(c1), putative
          Length = 463

 Score =  198 bits (504), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 93/126 (73%), Positives = 106/126 (84%)

Query: 1   GIEGSAIHSYRVCDFGTFKRSVAFHLEDAVELSSNTVFNPVKVSSQAVSSDPLHIGPFNK 60
           GIEGS IHSYRV DFG F +SVAF LEDAV+LS+NTVFN  K ++QA +SDPLHIG F+K
Sbjct: 28  GIEGSTIHSYRVSDFGAFDQSVAFRLEDAVDLSTNTVFNSAKANNQADTSDPLHIGSFDK 87

Query: 61  SNTSFNINPSAAQVESQRLSLEKNQQLNLVSISGGNTENWGESNMADASPRTDISTDADT 120
              SFNINPS AQ+ESQRL LEK QQLN++++S GNTENW ESNMAD SPRTD+STD DT
Sbjct: 88  LTASFNINPSPAQLESQRLPLEKGQQLNIIALSSGNTENWEESNMADGSPRTDLSTDGDT 147

Query: 121 DDKNQR 126
           DDKNQR
Sbjct: 148 DDKNQR 153