Jatropha Genome Database

JcCB0571821.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0571821.10 + phase: 2 /partial
         (133 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29929.m004563 Trichohyalin, putative                                  171   7e-44

>29929.m004563 Trichohyalin, putative
          Length = 640

 Score =  171 bits (434), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 91/133 (68%), Positives = 105/133 (78%)

Query: 1   YGLKTEEILMLDDRELNQYVSVKKLVPYKEREWKVPDNKRFQQKMWIRELMRGRLNHLKT 60
           YGLKTEEILMLDD+ELNQYVSVKKL PY++ EWKV  N++ Q K  I+EL RG LNH K 
Sbjct: 508 YGLKTEEILMLDDQELNQYVSVKKLAPYRDSEWKVHKNRKDQLKEKIKELRRGGLNHQKN 567

Query: 61  NKKNRSKVDGDKSTSSVDSHQDGQVEFEESNVKKEKLSRQAKRRRRQAELKLPASRLVAY 120
           +KKN+ K D DKST  VDSH+DG+ E E  NV+ E LSR+AKR+RRQAELKL  SR +AY
Sbjct: 568 SKKNKLKDDSDKSTLVVDSHKDGKEELEGQNVQMENLSRKAKRKRRQAELKLTLSRTLAY 627

Query: 121 QNIQSKAKGKRKH 133
           QN QSKAKGK KH
Sbjct: 628 QNAQSKAKGKGKH 640