Jatropha Genome Database

JcCB0568851.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0568851.10 - phase: 0 /partial
         (342 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

27810.m000634 nucleic acid binding protein, putative                  363   e-101
27810.m000633 nucleic acid binding protein, putative                  354   4e-98
30169.m006450 transcription factor, putative                          166   2e-41
29681.m001358 transcription factor, putative                           75   4e-14
29814.m000715 transcription factor, putative                           64   7e-11

>27810.m000634 nucleic acid binding protein, putative
          Length = 728

 Score =  363 bits (931), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 208/317 (65%), Positives = 244/317 (76%), Gaps = 20/317 (6%)

Query: 24  FNQPMSPTASSISHSSLAWPQPNVPTLHLPAXXXXXXXXXXXXXXXDIPPEDLNLLSDFD 83
           F  PMSP+A+S+SHSS+AWPQPNVP LHLP                DI  +D ++L DFD
Sbjct: 410 FTPPMSPSANSMSHSSVAWPQPNVPALHLPGSNLQSSRLRSSLNARDIQADDYSMLPDFD 469

Query: 84  A-QQQILNDLTCFSQSRNNSASLNRSGRSKTLTPSNLEELFSAEISSPRYSDQ--AAAVF 140
             QQQ+LN+L+  +Q   ++ SLNRSGR K LTPSNL++LFSAE SSPRY+DQ  A+AVF
Sbjct: 470 VQQQQLLNELSSLTQPALSNNSLNRSGRLK-LTPSNLDDLFSAESSSPRYADQALASAVF 528

Query: 141 SPTHKSAVLNQFQQQQSMLSPINTSVFSPKNVDHPLLQASFGMGSPGRMSPRSVEPISPM 200
           SPTHKSAVLNQFQQQQSMLSPINT+ FSPKNVDHPLLQASF   + GRMSPR+VEPISPM
Sbjct: 529 SPTHKSAVLNQFQQQQSMLSPINTN-FSPKNVDHPLLQASF---ASGRMSPRNVEPISPM 584

Query: 201 GSRLSAFVQREKQHQQLRSLSSRDLGSNNPAASIVESPVNSWTKWGSPNGKLDWSINGGD 260
            SR++   QREKQ QQLRSLSSR+LGSN  +A+IV SPVNSW+KWGS NGK DW+++  D
Sbjct: 585 SSRMTMLAQREKQQQQLRSLSSRELGSN--SAAIVGSPVNSWSKWGSSNGKPDWTVS-SD 641

Query: 261 ELGHLRRSSSFELGNNGEEPDLSWVQSLVKESPPEMLKEKFGVPVSGA----ASSGEGLN 316
           E G LRRS+SFELG NGEEPDLSWVQSLVKESP EM KEK  +PVS +    ASS E  N
Sbjct: 642 EFGKLRRSNSFELG-NGEEPDLSWVQSLVKESPTEM-KEKLTMPVSTSVAMGASSCESSN 699

Query: 317 PSSQIDS---VLESWLE 330
            +SQIDS   V+ +W+E
Sbjct: 700 VNSQIDSVDHVVGAWIE 716


>27810.m000633 nucleic acid binding protein, putative
          Length = 725

 Score =  354 bits (908), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 205/315 (65%), Positives = 240/315 (76%), Gaps = 17/315 (5%)

Query: 24  FNQPMSPTASSISHSSLAWPQPNVPTLHLPAXXXXXXXXXXXXXXXDIPPEDLNLLSDFD 83
           F  PMSP+A+S+SHSS+AWPQPNVP LHLP                DIP  D ++L DFD
Sbjct: 408 FTPPMSPSANSMSHSSVAWPQPNVPALHLPGSNLQSSRLRSSLNARDIPAGDYSMLPDFD 467

Query: 84  A-QQQILNDLTCFSQSRNNSASLNRSGRSKTLTPSNLEELFSAEISSPRYSDQ--AAAVF 140
             QQQ+LN+L+  +Q   ++ SLNRSGR K LTPSNL++LF AE SSPRY+DQ  A+AVF
Sbjct: 468 VQQQQLLNELSSLTQPPLSNNSLNRSGRLKILTPSNLDDLFFAESSSPRYADQALASAVF 527

Query: 141 SPTHKSAVLNQFQQQQSMLSPINTSVFSPKNVDHPLLQASFGMGSPGRMSPRSVEPISPM 200
           SP+HKSAVLNQFQQQQSMLSPINT+ FSPKNVD  LLQASF   + GRMSPR+VEPISPM
Sbjct: 528 SPSHKSAVLNQFQQQQSMLSPINTN-FSPKNVDPHLLQASF---ASGRMSPRNVEPISPM 583

Query: 201 GSRLSAFVQREKQHQQLRSLSSRDLGSNNPAASIVESPVNSWTKWGSPNGKLDWSINGGD 260
            SR+S   QREKQ QQLRSLSSR+LG+N  +A+IV SPVNSW KWGS NGK DW+ +  +
Sbjct: 584 SSRVSLLAQREKQQQQLRSLSSRELGTN--SAAIVGSPVNSWIKWGSSNGKPDWTTS-NN 640

Query: 261 ELGHLRRSSSFELGNNGEEPDLSWVQSLVKESPPEMLKEKFGVPVS--GAASSGEGLNPS 318
           E G LRRS+SFELG NGEEPDLSWVQSLVKESP EM KEK  +PVS  GAASS E  N +
Sbjct: 641 EFGKLRRSNSFELG-NGEEPDLSWVQSLVKESPTEM-KEKMAMPVSTNGAASSRESSNVN 698

Query: 319 SQIDSV---LESWLE 330
           SQI+SV   + +W+E
Sbjct: 699 SQIESVDHMVGAWIE 713


>30169.m006450 transcription factor, putative
          Length = 675

 Score =  166 bits (419), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 127/314 (40%), Positives = 172/314 (54%), Gaps = 31/314 (9%)

Query: 24  FNQPMSPTASSISHSSLAWPQPNVPTLHLPAXXXXXXXXXXXXXXXDIPPEDLNLLSDFD 83
           +  PMSP+ + I H  +AWPQ +   + +                  + PE+ N   D +
Sbjct: 377 YTPPMSPSGNDI-HLPMAWPQQDTSNMQILGNNLQGSRLRTSLSGRYVSPEEFNRFQDIE 435

Query: 84  AQQ-QILNDLTCFSQSRNNSASLNRSGRSKTLTPSNLEELFSAEISSPRYSDQ--AAAVF 140
            Q+  + N+ +C  Q  +  +S N S R K L PSN + L S++      +DQ  AA++F
Sbjct: 436 LQKLHLRNEQSCVPQPHHRISSTNISARLKQLNPSNQDRLLSSQ-----NADQMDAASMF 490

Query: 141 SPTHKSAVLNQFQQQQSMLSPINTSVFSPKNVDHPLLQASFGMGSPGRMSPRSVEPISPM 200
           SP++KSAV+N+ QQQ SMLSPI TS FS KN+DHPLLQ SF   SP  MSPR  EPIS  
Sbjct: 491 SPSYKSAVINKLQQQ-SMLSPIKTSGFSLKNIDHPLLQVSFDSSSPRTMSPRINEPISLA 549

Query: 201 GSRLSAFVQREKQHQQLRSLSSRDLGSNNPAASIVESPVNSWTKWGSPNGKLDWSINGGD 260
            S+L           QL SLSSR+LGS+ P   +    V+ W K    +  +DWSI   D
Sbjct: 550 SSQLQL---------QLGSLSSRELGSDLP-YDLGYDGVSLWPKQKPADENVDWSIQ-AD 598

Query: 261 ELGHLRRSSSFELGNNGEEPDLSWVQSLVKESPPEMLKEKFGVPVSGAASSGEGLNPSSQ 320
           E+G L++S S      GEEPD+SWV S++KES  E  +E   V VSG   +GEG  P+  
Sbjct: 599 EVGQLQKSCSNV--RCGEEPDVSWVHSMLKESSSET-EETGLVSVSG---NGEGSTPNPP 652

Query: 321 IDS----VLESWLE 330
            +S     L +WLE
Sbjct: 653 NESNDLVGLRAWLE 666


>29681.m001358 transcription factor, putative
          Length = 702

 Score = 75.1 bits (183), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 66/208 (31%), Positives = 105/208 (50%), Gaps = 28/208 (13%)

Query: 100 NNSASLNRSGRSKTLTPSNLEELFSAEISSPRYSDQAAAVFSPTHKSAVLNQFQQQQSML 159
           + +  L+R G  K   P+NLE++F +   S     Q  +V + + +       Q +Q++ 
Sbjct: 468 DRTGELHRLGGVK---PTNLEDIFGSLDPSILPQLQGLSVDATSSQLQSPTGIQIRQNIN 524

Query: 160 SPINTSVFSPKNVDH-PLLQASFGMGSPGRMSPRSVEPISPMGSRLSAFVQREKQHQQLR 218
             + +S   P N    P+  +SFG+       P      + + SR +AF +R +   + R
Sbjct: 525 QQLRSSY--PTNFSSSPVRPSSFGI------DPSGAAAAAVLTSRSAAFAKRSQSFVE-R 575

Query: 219 SLSSRDLGSNNPAASIVESPVNSWTKWGSPNGKLDWSINGGDELGHLRRSSSFELGNNG- 277
           S  +R  G ++P +S      N ++ WGSP+GKLDW I  G+EL  LR+S+SF + NNG 
Sbjct: 576 SAVNRHTGFSSPTSSATIMASN-FSDWGSPDGKLDWGIQ-GEELNKLRKSASFGIRNNGG 633

Query: 278 ------------EEPDLSWVQSLVKESP 293
                         PD+SWVQSLVK++P
Sbjct: 634 AGAAATSLPATLNAPDVSWVQSLVKDAP 661


>29814.m000715 transcription factor, putative
          Length = 346

 Score = 64.3 bits (155), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 104/228 (45%), Gaps = 35/228 (15%)

Query: 85  QQQILNDLTCFSQSRNNSASLNRSGRSKTLTPSNLEELFSAEISSPRYSDQAAAVFSPTH 144
           QQQ +++++  S     S   NR G    L P+NL+++F +   S       A +   + 
Sbjct: 98  QQQFMDEMSGLSSPSCWSKDFNRVG---DLKPTNLDDVFGSLDPS-----LLAPLQGLSF 149

Query: 145 KSAVLNQFQQQQSMLSPINTSVFS---PKNVDHPLLQ--ASFGMGSPGRMSPRSVEPISP 199
           KS+   Q Q    +    N + F    P N+    ++  A++G  S       +    + 
Sbjct: 150 KSSTPTQLQSPTGLEIRQNMNQFRSSYPTNLSSSPVRKPAAYGFDS------SAAVAAAM 203

Query: 200 MGSRLSAFVQREKQHQQLRSLSSRDLGSNNPAASIVESPVNSWTKWGSPNGKLDWSINGG 259
           M SR SAF +R       R  ++  LG    A S+     N  + W SP+GKLDW + G 
Sbjct: 204 MNSRSSAFAKRSHSFID-RGAATNRLGITAAANSVSMMSAN-LSDWSSPDGKLDWGVQG- 260

Query: 260 DELGHLRRSSSFELGN-------------NGEEPDLSWVQSLVKESPP 294
           DEL  L++S+SF   +             N +EPD+SWV +LVK+ PP
Sbjct: 261 DELNKLKKSASFGFRSSNNPTMRTNFALPNVDEPDVSWVNTLVKDVPP 308