Jatropha Genome Database

JcCB0551261.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0551261.10 - phase: 0 
         (332 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29830.m001441 undecaprenyl diphosphate synthase, putative             290   5e-79
28565.m000330 undecaprenyl diphosphate synthase, putative             173   1e-43
28565.m000331 undecaprenyl diphosphate synthase, putative             169   2e-42
28565.m000328 undecaprenyl diphosphate synthase, putative             159   1e-39
29681.m001337 undecaprenyl pyrophosphate synthetase, putative         111   5e-25
34670.m000028 undecaprenyl pyrophosphate synthetase, putative          57   1e-08

>29830.m001441 undecaprenyl diphosphate synthase, putative
          Length = 381

 Score =  290 bits (743), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 172/347 (49%), Positives = 211/347 (60%), Gaps = 86/347 (24%)

Query: 6   MTKSSSRVAELFGNLGGLLRICLFQIVSMGPIPSHFAFIMDGNRRYAKKGNLKLGAGHQA 65
           M  S SRV ELF +L   +RIC+F+I+S+GPIP+H AFIMDGNRRYAKK N+K GAGH+A
Sbjct: 2   MKNSVSRVTELFCSLVSFMRICMFRILSVGPIPNHIAFIMDGNRRYAKKENMKEGAGHRA 61

Query: 66  GFESLISILMYCYELGVKYVTIYAFSIDNFKRRPDEVKDLMDLMLEKIDEMLKEESMAKQ 125
           GF +LISIL YCYELGVKYVT+YAFSIDNFKRRPDEV+DLMDLMLEKI+E+LKEES+  Q
Sbjct: 62  GFSALISILKYCYELGVKYVTVYAFSIDNFKRRPDEVQDLMDLMLEKIEELLKEESIVNQ 121

Query: 126 YGIRVYFKDE---VDES---------QATAASANCSGLIREVGGVDTENSMVMHAVHTSY 173
           YGIRVYF      ++E          +ATA +  C+ LI       T    ++HAV  S 
Sbjct: 122 YGIRVYFIGNLTLLNEPVRIAAEKVMRATANNTKCTFLI---CIAYTSCDEIVHAVQESC 178

Query: 174 -------------------------------EDQAVMANRTGHGVAPIEES--------E 194
                                          + Q + A++T +G+  +E           
Sbjct: 179 KFKRQEFQPLTFSQHSNDGIGFQETQKDEFDKSQEIKASKTSNGLTRVEGGGNKISMAVP 238

Query: 195 KMQGEC--------------------------------SMIKLVDIEKYMYMAVAPEPDI 222
             QG C                                S+IKLVDIE+ MYMAVAPEPDI
Sbjct: 239 AAQGLCENKWDKDQTLTKNKTENGVLPSEESEKMQGACSLIKLVDIERNMYMAVAPEPDI 298

Query: 223 LVRSSGETRLSNFLLWQSSNCLLYSPDALWPEIGLWHLVWAILDFQR 269
           L+RSSGETRLSNFLLWQ+S+C+LYSPDALWPEIG  HLVW +++FQ+
Sbjct: 299 LIRSSGETRLSNFLLWQASDCMLYSPDALWPEIGFQHLVWVVINFQQ 345


>28565.m000330 undecaprenyl diphosphate synthase, putative
          Length = 370

 Score =  173 bits (438), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 79/124 (63%), Positives = 101/124 (81%)

Query: 9   SSSRVAELFGNLGGLLRICLFQIVSMGPIPSHFAFIMDGNRRYAKKGNLKLGAGHQAGFE 68
           ++SR+ +LFG+L   +R  +F+++  GPIPSH + IMDGNRR+ KK NLK GAG++AGF 
Sbjct: 5   NNSRMNKLFGHLASFMRRSIFRVLCNGPIPSHLSVIMDGNRRFTKKENLKPGAGYRAGFS 64

Query: 69  SLISILMYCYELGVKYVTIYAFSIDNFKRRPDEVKDLMDLMLEKIDEMLKEESMAKQYGI 128
           +L+S+L YCYELGVKYVTI+AF IDNFKRR DEV+ +MDLMLEK   MLKEES+  QYG+
Sbjct: 65  ALMSMLKYCYELGVKYVTIFAFGIDNFKRRSDEVQVIMDLMLEKTLGMLKEESIVHQYGV 124

Query: 129 RVYF 132
           RVYF
Sbjct: 125 RVYF 128



 Score =  155 bits (393), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 82/174 (47%), Positives = 116/174 (66%), Gaps = 10/174 (5%)

Query: 114 DEMLKEESMAKQYGIRVYFKDEVDESQATAASANCSGLIREVGGVDTENSMVMHAVHTS- 172
           ++++K E+       R + K+E DE QA  AS+   G+ +    +  E+S+  +A+  S 
Sbjct: 195 NDLVKVEAGKNINNAREFCKEEADELQAGKASSESDGVNKGTEEICNEHSVTANAIQRSG 254

Query: 173 ------YEDQAVMANRTGHGVAP--IEESEKMQGECSMIKLVDIEKYMYMAVAPEPDILV 224
                  E Q +   R+G+ V+    EE EKMQ   S+IK VD++K+MYMAVAP+PDIL+
Sbjct: 255 FGDKWDDEGQPLWETRSGNSVSGNLDEEREKMQSN-SIIKQVDLQKHMYMAVAPDPDILI 313

Query: 225 RSSGETRLSNFLLWQSSNCLLYSPDALWPEIGLWHLVWAILDFQRNHSYLEKKR 278
           R++GETRLSNFLLWQ+ +C LYSPD LWPE GL HLVWA+L+FQR+ +Y EKK+
Sbjct: 314 RTAGETRLSNFLLWQAGDCPLYSPDVLWPEFGLRHLVWAVLNFQRSCAYSEKKK 367


>28565.m000331 undecaprenyl diphosphate synthase, putative
          Length = 363

 Score =  169 bits (427), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 76/118 (64%), Positives = 96/118 (81%)

Query: 15  ELFGNLGGLLRICLFQIVSMGPIPSHFAFIMDGNRRYAKKGNLKLGAGHQAGFESLISIL 74
           +L G L   +R  +F ++ MGPIPSH +FIMDGNRR+ KK NLK GAG++AGF +L+S+L
Sbjct: 3   QLLGRLASFMRQSIFHVLRMGPIPSHLSFIMDGNRRFTKKENLKPGAGYRAGFLALMSML 62

Query: 75  MYCYELGVKYVTIYAFSIDNFKRRPDEVKDLMDLMLEKIDEMLKEESMAKQYGIRVYF 132
            YCYELGVK+VTI+AF IDNFKRRPDEV+ +MDL+LEK   +LKEES+  QYGIRV+F
Sbjct: 63  KYCYELGVKHVTIFAFGIDNFKRRPDEVRFIMDLILEKTLGLLKEESIVHQYGIRVHF 120



 Score =  153 bits (387), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 79/151 (52%), Positives = 105/151 (69%), Gaps = 6/151 (3%)

Query: 133 KDEVDESQATAASANCSGLIREVGGVDTENSMVMHAVHTSY-----EDQAVMANRTGHGV 187
           K+E DE QA  A    +G+ + V  +  E+S+ +  V  ++     E QA+ + RTG   
Sbjct: 211 KEEADELQAAKAKPESNGVTKGVEEIFNEHSVTVSTVQRAFGGKDREGQALWSIRTGDSG 270

Query: 188 APIEESEKMQGECSMIKLVDIEKYMYMAVAPEPDILVRSSGETRLSNFLLWQSSNCLLYS 247
              EE EKMQ   S+IK VD+EK+M MAVAP+PDIL+R+SGETRLSNFLLWQ+ +C  YS
Sbjct: 271 IRDEEREKMQSH-SIIKQVDLEKHMPMAVAPDPDILIRTSGETRLSNFLLWQAGDCQGYS 329

Query: 248 PDALWPEIGLWHLVWAILDFQRNHSYLEKKR 278
           PDALWP+I L  LVWA+L+FQ N++YLEKK+
Sbjct: 330 PDALWPDIVLRQLVWAVLNFQYNYAYLEKKK 360


>28565.m000328 undecaprenyl diphosphate synthase, putative
          Length = 331

 Score =  159 bits (403), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 71/117 (60%), Positives = 93/117 (79%)

Query: 16  LFGNLGGLLRICLFQIVSMGPIPSHFAFIMDGNRRYAKKGNLKLGAGHQAGFESLISILM 75
           +F   G L+  C+F ++SMGPIP H +F+MDGNRR+AKK NL+ GAGH+AG  +LI+IL 
Sbjct: 4   MFECSGSLITRCIFGVLSMGPIPGHLSFLMDGNRRFAKKENLETGAGHKAGSSALITILK 63

Query: 76  YCYELGVKYVTIYAFSIDNFKRRPDEVKDLMDLMLEKIDEMLKEESMAKQYGIRVYF 132
           YCY+L VKYVT+YAFSI+NF R P EV+ +MDLMLE  + +LKEES+  Q+GIRV+F
Sbjct: 64  YCYDLRVKYVTVYAFSIENFNRPPHEVQTVMDLMLETTEGLLKEESVVHQHGIRVHF 120



 Score =  150 bits (379), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 72/106 (67%), Positives = 86/106 (81%), Gaps = 4/106 (3%)

Query: 174 EDQAVMANRTGHGVAPIEESEKMQGECSMIKLVDIEKYMYMAVAPEPDILVRSSGETRLS 233
           E QA+   RTG+     EE  KMQ   S+IK VD+EK MYMAVAP+PDIL+R+SGETRLS
Sbjct: 228 EGQALWETRTGNR---DEERAKMQSH-SIIKQVDVEKPMYMAVAPDPDILIRTSGETRLS 283

Query: 234 NFLLWQSSNCLLYSPDALWPEIGLWHLVWAILDFQRNHSYLEKKRS 279
           NFLLWQ+SNC LYSPD LWPE GL HLVWA+L+FQR+H+YLEKK++
Sbjct: 284 NFLLWQASNCPLYSPDVLWPEFGLRHLVWAVLNFQRSHAYLEKKKN 329


>29681.m001337 undecaprenyl pyrophosphate synthetase, putative
          Length = 310

 Score =  111 bits (277), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 76/235 (32%), Positives = 118/235 (50%), Gaps = 17/235 (7%)

Query: 37  IPSHFAFIMDGNRRYAKKGNLKLGAGHQAGFESLISILMYCYELGVKYVTIYAFSIDNFK 96
           +P H A IMDGN R+AK+       GH+AG  SL+ I+  C   G+K +T++AFS +N+ 
Sbjct: 78  MPRHVAVIMDGNGRWAKQQGWPPSKGHEAGVRSLMEIMNLCGHWGIKVLTVFAFSCENWT 137

Query: 97  RRPDEVKDLMDL----MLEKIDEMLKEESMAKQYGIRVYFKDEVDESQATAASANCSGLI 152
           R   E+  LM L    +  +++ +L+E       GIRV    +V     +    +   LI
Sbjct: 138 RPKVEIDFLMSLFERVLKSELENLLRE-------GIRVSIIGDV-----SKLPESLQRLI 185

Query: 153 REVGGVDTENSMVMHAVHTSYEDQAVMANRTGHGVAPIEESEKMQGECSMIKLVDIEKYM 212
           REV     + S +   V  SY  +  +     +    ++E   ++ E     L++ E   
Sbjct: 186 REVEDTTKDYSKLHLLVAVSYSGKYDVVKACRNIAGRVKEG-AIEPEDISEDLIEQELET 244

Query: 213 YMAVAPEPDILVRSSGETRLSNFLLWQSSNCLLYSPDALWPEIGLWHLVWAILDF 267
             +  P PD+L+R+SGE R+SNFLLWQ +   LY  + LWP+ G    V A+  F
Sbjct: 245 NCSEHPSPDLLIRTSGELRISNFLLWQLAYTELYFAEELWPDFGKDGFVEALTSF 299


>34670.m000028 undecaprenyl pyrophosphate synthetase, putative
          Length = 165

 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 69/151 (45%), Gaps = 17/151 (11%)

Query: 115 EMLKEESMAKQYGIRVYFKDEVDESQATAASANCSGLIREVGGVDTENSMVMHAVHTSYE 174
           E+ KE    +  G RV  KD++              L+ E      +N+ +   +  +Y 
Sbjct: 9   ELHKENVRVRVIGDRVGLKDDI------------RALLEEAEQTTRDNTALTLIIAFNYG 56

Query: 175 DQAVMANRTGHGVAPIEESEKMQGECSMIKLVDIEKYMYMAVAPEPDILVRSSGETRLSN 234
            +  +A         + E    + + S I    I   +  A  P+PD+++R+SGE RLSN
Sbjct: 57  ARDEIARAAASLARDVAEG---RLDASAITPDAISARLDTAGIPDPDLIIRTSGEERLSN 113

Query: 235 FLLWQSS-NCLLYSPDALWPEIGLWHLVWAI 264
           FLLWQ++ +  L+ PD  WP+     LV AI
Sbjct: 114 FLLWQAAYSEFLFIPD-YWPDFNRQTLVAAI 143