Jatropha Genome Database

JcCB0550571.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0550571.10 + phase: 1 /pseudo/partial
         (280 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29585.m000583 amino acid binding protein, putative                    427   e-120
28462.m000129 amino acid binding protein, putative                    246   8e-66
30078.m002281 amino acid binding protein, putative                    239   9e-64

>29585.m000583 amino acid binding protein, putative
          Length = 420

 Score =  427 bits (1098), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 207/260 (79%), Positives = 236/260 (90%), Gaps = 8/260 (3%)

Query: 28  ELLLTEKRRVDTCRHLFAVFKEYCISCELQLAGPEYESLQNFSSLPLTIAEELFS----- 82
           +LL TEKRR DTCRHL +VFKE CISCELQLAGPEYESLQ FSSLPL IAEELFS     
Sbjct: 162 DLLHTEKRRSDTCRHLASVFKECCISCELQLAGPEYESLQAFSSLPLPIAEELFSCEQLE 221

Query: 83  --SCTQAILMDTSSSKKASVTVDNHLSPAHTLLQIQCIDQKGLFYDILRTSKDCDIQIAY 140
             +C+QA+  DT + K A+VTVDN++SPAHTLLQ++CIDQKGLFYDILRTSKDC+I++AY
Sbjct: 222 EKTCSQALCTDTIADK-ATVTVDNNMSPAHTLLQLKCIDQKGLFYDILRTSKDCNIRVAY 280

Query: 141 GRFSSSVKGHRNVDLFIQQSDGKKIIDPKLQLTLCSRLKAEMLHPFRVIVVNQGPDTELL 200
           GRFSSS+KG+RN+DLFIQQ+DGKKI+DPK QL LCSRLKAEML PFRVI+ N+GPDTELL
Sbjct: 281 GRFSSSLKGYRNMDLFIQQTDGKKIMDPKHQLMLCSRLKAEMLRPFRVIIANRGPDTELL 340

Query: 201 VANPVELCGKGRPRVFYDVTLALKTLGICIFSAKIGRHSTEDRQWEVYRFLLDENCEVPI 260
           VANPVEL GKGRPRVFYDVTLALKTLGICIFSA+I RHST+D+QWEVYRFLL+ENCEVP+
Sbjct: 341 VANPVELSGKGRPRVFYDVTLALKTLGICIFSAEIARHSTQDQQWEVYRFLLNENCEVPL 400

Query: 261 ASAKSRKQIVDRVRKTLMGW 280
           ASA++RKQIVDRV+KTLMGW
Sbjct: 401 ASAQARKQIVDRVKKTLMGW 420


>28462.m000129 amino acid binding protein, putative
          Length = 413

 Score =  246 bits (628), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 136/256 (53%), Positives = 168/256 (65%), Gaps = 6/256 (2%)

Query: 27  RELLLTEKRRVDTCRHLFAVFKEYCISCELQLAGPEYESLQNFSSL-PLTIAEELFS-SC 84
           RELL T+ R+ +T  +L  V  +  ISCE++ AG E  +    SSL P  I E++F+   
Sbjct: 161 RELLHTKHRQEETIHYLKDVLGDALISCEIESAGAEVTACSQGSSLLPSAITEDMFNMEL 220

Query: 85  TQAILMDTSSSKKASVTVDNHLSPAHTLLQIQCIDQKGLFYDILRTSKDCDIQIAYGRFS 144
                    +    SV++DN LS +HTLLQ  C D KGL YDI+RT KD +IQI+YGRF 
Sbjct: 221 PDKQRKGFLTPNPVSVSMDNTLSRSHTLLQFLCKDHKGLMYDIMRTLKDYNIQISYGRFY 280

Query: 145 SSVKGHRNVDLFIQQSDGKKIIDPKLQLTLCSRLKAEMLHPFRVIVVNQGPDTELLVANP 204
           ++ KGH  VDLFI Q+DGKKIID   Q  LCSRL+ E+L P RV VV++GPDTELLVANP
Sbjct: 281 ATPKGHCEVDLFIMQADGKKIIDSYKQDALCSRLRMELLRPLRVAVVSRGPDTELLVANP 340

Query: 205 VELCGKGRPRVFYDVTLALKTLGICIFSAKIGRHSTEDRQWEVYRFLLDENCEVPIASAK 264
           VEL  +GRP VFYD+TLALK L   IFS +IGRH   DR+WEVYR LLDE     +    
Sbjct: 341 VELSERGRPLVFYDITLALKILNTRIFSVEIGRHMIHDREWEVYRILLDEGDGFTVP--- 397

Query: 265 SRKQIVDRVRKTLMGW 280
            R +I + VRK LMGW
Sbjct: 398 -RNKIEESVRKRLMGW 412


>30078.m002281 amino acid binding protein, putative
          Length = 409

 Score =  239 bits (611), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 133/256 (51%), Positives = 172/256 (67%), Gaps = 10/256 (3%)

Query: 27  RELLLTEKRRVDTCRHLFAVFKEYCISCELQLAGPEYE--SLQNFSSLPLTIAEELFSSC 84
           RELL T KR+ +T   L +V  +  ISC++++ GPE    SL++ SSLP TI E++    
Sbjct: 161 RELLHTNKRKEETYGQLKSVIGDGMISCDIEMVGPEITACSLES-SSLPTTITEDMLH-- 217

Query: 85  TQAILMDTSSSKKASVTVDNHLSPAHTLLQIQCIDQKGLFYDILRTSKDCDIQIAYGRFS 144
              +   + +S   SVT+DN LSP HTL+QI C D KGL YDI+RT KD +I+I+YGRFS
Sbjct: 218 -WEVPPGSLTSISVSVTMDNSLSPGHTLVQIACQDHKGLLYDIMRTLKDYNIKISYGRFS 276

Query: 145 SSVKGHRNVDLFIQQSDGKKIIDPKLQLTLCSRLKAEMLHPFRVIVVNQGPDTELLVANP 204
              + +  +DLFI Q+DGKKI+DP  Q  LCSRL+ E+L P RV VV++GPD ELLVANP
Sbjct: 277 IKQRRNCEIDLFIVQADGKKIVDPSKQGALCSRLEMELLRPLRVAVVSRGPDIELLVANP 336

Query: 205 VELCGKGRPRVFYDVTLALKTLGICIFSAKIGRHSTEDRQWEVYRFLLDENCEVPIASAK 264
           VEL G GRP VF+D+TLALK L   IFSA+I R    DR++EVYR LLDE   + +    
Sbjct: 337 VELSGNGRPLVFHDITLALKMLSTGIFSAEIRRCMIGDREYEVYRVLLDEGEGLSVP--- 393

Query: 265 SRKQIVDRVRKTLMGW 280
            R +I +RV   LMGW
Sbjct: 394 -RSKIQERVWNMLMGW 408