Jatropha Genome Database

JcCB0549901.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0549901.10 + phase: 1 /partial
         (166 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28094.m000179 pentatricopeptide repeat-containing protein, putative   171   1e-43
30128.m008833 pentatricopeptide repeat-containing protein, putative    54   4e-08
30076.m004632 pentatricopeptide repeat-containing protein, putative    53   7e-08
29848.m004530 pentatricopeptide repeat-containing protein, putative    52   1e-07
30182.m000133 pentatricopeptide repeat-containing protein, putative    51   3e-07
29092.m000445 pentatricopeptide repeat-containing protein, putative    50   4e-07
29811.m000547 pentatricopeptide repeat-containing protein, putative    50   5e-07
29999.m000210 pentatricopeptide repeat-containing protein, putative    50   5e-07
29726.m004047 pentatricopeptide repeat-containing protein, putative    50   7e-07
30114.m000527 pentatricopeptide repeat-containing protein, putative    49   8e-07
29950.m001175 pentatricopeptide repeat-containing protein, putative    49   1e-06
29801.m003071 pentatricopeptide repeat-containing protein, putative    49   1e-06
30098.m001706 pentatricopeptide repeat-containing protein, putative    49   2e-06
29983.m003250 pentatricopeptide repeat-containing protein, putative    48   2e-06
29851.m002466 pentatricopeptide repeat-containing protein, putative    48   2e-06
29780.m001348 pentatricopeptide repeat-containing protein, putative    47   3e-06
30147.m014056 pentatricopeptide repeat-containing protein, putative    47   3e-06
27965.m000110 pentatricopeptide repeat-containing protein, putative    47   4e-06
29780.m001341 pentatricopeptide repeat-containing protein, putative    47   4e-06
29736.m002066 pentatricopeptide repeat-containing protein, putative    46   8e-06

>28094.m000179 pentatricopeptide repeat-containing protein, putative
          Length = 553

 Score =  171 bits (433), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 83/113 (73%), Positives = 97/113 (85%), Gaps = 8/113 (7%)

Query: 1   VTYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKE 60
           VTYG LIKGYAK  +L+ MM+KYEEMQL GVKANQTIFTTIMDA+GKNKDFGSAV WYKE
Sbjct: 421 VTYGALIKGYAKTNNLDKMMEKYEEMQLRGVKANQTIFTTIMDAYGKNKDFGSAVIWYKE 480

Query: 61  MERHGVPPDQKAKNVLLSLAKTADEKEEANQLVGYSDN--------GASRFVN 105
           ME++GVPPDQKAKN+LLSLAKTADE++EANQ+VG+S +        G+SR +N
Sbjct: 481 MEQYGVPPDQKAKNILLSLAKTADEQKEANQMVGHSGDCGDAHSIFGSSRLLN 533


>30128.m008833 pentatricopeptide repeat-containing protein, putative
          Length = 546

 Score = 53.9 bits (128), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 3/81 (3%)

Query: 1   VTYGTLIKGYAKIKDLENMMKK---YEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSW 57
           +TY TLI GY K+  +  M K     +EM+  G+  N+  F  ++D   K+K+  +A+  
Sbjct: 199 ITYNTLIDGYCKMGKIGKMYKADAILKEMRADGICPNEVTFNILIDGFCKDKNVSAAMKV 258

Query: 58  YKEMERHGVPPDQKAKNVLLS 78
           + EM R GV P+    N L++
Sbjct: 259 FAEMNRQGVKPNVVTYNSLIN 279



 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 49/97 (50%)

Query: 1   VTYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKE 60
           +T+  L+ G+ K K ++   + +++M   G+  N T +  ++DA+ K+++   A + Y+ 
Sbjct: 307 ITHNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNILIDAYCKDENMEDAFALYRI 366

Query: 61  MERHGVPPDQKAKNVLLSLAKTADEKEEANQLVGYSD 97
           M   GV PD    N L++      + E A  LV   D
Sbjct: 367 MLGKGVCPDVSTYNCLIAGLCRKGDLEAARNLVSEMD 403


>30076.m004632 pentatricopeptide repeat-containing protein, putative
          Length = 878

 Score = 52.8 bits (125), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%)

Query: 1   VTYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKE 60
           VTY T+I GYAK+  L++ +  + EM+  GV  ++  + T++  + K   F  A+   KE
Sbjct: 367 VTYSTMIDGYAKVGRLDDALNMFNEMKFLGVGLDRVSYNTLLSVYAKLGRFEQALDVCKE 426

Query: 61  MERHGVPPDQKAKNVLLS 78
           ME  G+  D    N LL+
Sbjct: 427 MENAGIRKDVVTYNALLA 444


>29848.m004530 pentatricopeptide repeat-containing protein, putative
          Length = 1113

 Score = 52.0 bits (123), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 43/88 (48%)

Query: 2   TYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKEM 61
           TYG L+ G  K   LE   + +EEM   G + N  I+  +++  GK  D  +A   +K M
Sbjct: 897 TYGPLLDGLLKSGRLEEAKELFEEMVDYGCRPNNAIYNILINGFGKTGDVNTACELFKRM 956

Query: 62  ERHGVPPDQKAKNVLLSLAKTADEKEEA 89
            R G+ PD K+   L+     A   ++A
Sbjct: 957 VREGIRPDLKSYTSLVGCLCEAGRVDDA 984


>30182.m000133 pentatricopeptide repeat-containing protein, putative
          Length = 841

 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 50/90 (55%)

Query: 3   YGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKEME 62
           Y +LI+ Y K   L+  ++ ++EM+ +G + N  ++T I+++H K+     A S +K+M+
Sbjct: 396 YVSLIESYTKAGKLDTALRLWDEMKKAGFRPNYGLYTLIIESHAKSGKLDIATSIFKDMD 455

Query: 63  RHGVPPDQKAKNVLLSLAKTADEKEEANQL 92
           + G  P     + LL +   + + + A +L
Sbjct: 456 KAGFLPTPSTYSCLLEMHAASGQVDSAMKL 485


>29092.m000445 pentatricopeptide repeat-containing protein, putative
          Length = 817

 Score = 50.4 bits (119), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 37/77 (48%)

Query: 1   VTYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKE 60
           V Y T + GY +I D+   +   E M+  G++ N   F +++D     K+   A  W K+
Sbjct: 387 VIYNTFVNGYCRIGDMNKAILTIERMESFGLRPNSITFNSLIDKFCDMKEMDKAEEWVKK 446

Query: 61  MERHGVPPDQKAKNVLL 77
           M   GV P  +  N L+
Sbjct: 447 MAEKGVTPSVETYNTLI 463



 Score = 49.3 bits (116), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 43/92 (46%)

Query: 1   VTYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKE 60
           VTY TLI GY K+ +L+   K  E M+   V  N   F +++    K +    A S  KE
Sbjct: 247 VTYNTLIDGYCKVGELDAAFKMRERMKEKSVAPNIITFNSLLSGLCKMRKMKEARSLLKE 306

Query: 61  MERHGVPPDQKAKNVLLSLAKTADEKEEANQL 92
           ME +G  PD    ++L       D+   A +L
Sbjct: 307 MEVNGFMPDGYTYSILFDGLLRCDDGNGAMEL 338


>29811.m000547 pentatricopeptide repeat-containing protein, putative
          Length = 677

 Score = 50.1 bits (118), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 46/92 (50%)

Query: 1   VTYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKE 60
           V Y T++ G  K K L +    ++EM   GV  +   FTT++  H K  + G A+S +  
Sbjct: 396 VAYNTILNGLCKKKLLADANALFDEMVERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGI 455

Query: 61  MERHGVPPDQKAKNVLLSLAKTADEKEEANQL 92
           M +  + PD    N+L+       E E+AN+L
Sbjct: 456 MTQKNIKPDIVTYNILIDGFCKTTEMEKANEL 487


>29999.m000210 pentatricopeptide repeat-containing protein, putative
          Length = 630

 Score = 50.1 bits (118), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 52/100 (52%), Gaps = 1/100 (1%)

Query: 1   VTYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKE 60
           +TY TLI G+ K K +E   + +++M++ G+  N   + T++D   K++    A     +
Sbjct: 350 ITYNTLIDGFCKNKKIEEAEEIFDQMEIQGLSRNSVTYNTLIDGLCKSRRVQEAAQLMDQ 409

Query: 61  MERHGVPPDQKAKNVLLS-LAKTADEKEEANQLVGYSDNG 99
           M   G+ PD+   N +L+   +  D ++ A+ +   + NG
Sbjct: 410 MIMEGLKPDKFTYNSMLTYFCREGDIQKAADIVQTMTSNG 449


>29726.m004047 pentatricopeptide repeat-containing protein, putative
          Length = 901

 Score = 49.7 bits (117), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 48/89 (53%)

Query: 1   VTYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKE 60
           VTYG++I G AKI  L+     +EE + +G++ N  I+++++D  GK      A    +E
Sbjct: 653 VTYGSVIDGLAKIDRLDEAYMLFEEAKSNGLELNVVIYSSLIDGFGKVGRIDEAYLIMEE 712

Query: 61  MERHGVPPDQKAKNVLLSLAKTADEKEEA 89
           + + G+ P+    N LL     A+E  EA
Sbjct: 713 LMQKGLTPNVYTWNCLLDALVKAEEINEA 741


>30114.m000527 pentatricopeptide repeat-containing protein, putative
          Length = 955

 Score = 49.3 bits (116), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 51/89 (57%)

Query: 1   VTYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKE 60
           V + TLI GY K+ ++    + + ++Q +G++ ++T + ++++  G+  ++  A  +YKE
Sbjct: 401 VAFNTLITGYGKLSNMAAAQRLFLDIQNAGLEPDETTYRSMIEGWGRTGNYKEAEWYYKE 460

Query: 61  MERHGVPPDQKAKNVLLSLAKTADEKEEA 89
           ++R G  P+      L++L    D+ E A
Sbjct: 461 LKRLGYMPNSSNLYTLINLQAKHDDDEGA 489


>29950.m001175 pentatricopeptide repeat-containing protein, putative
          Length = 581

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 49/92 (53%)

Query: 1   VTYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKE 60
           V+Y ++I  Y+K  +L  + K Y +M+  G++ ++ I+ +++ A  K +    A++  K 
Sbjct: 305 VSYASIISCYSKAGNLYKVFKLYNQMKEVGIEPDRKIYNSVIFALAKGRHVSEAINLMKT 364

Query: 61  MERHGVPPDQKAKNVLLSLAKTADEKEEANQL 92
           ME  G+ P+    N L+     A + +EA  L
Sbjct: 365 MEEKGIAPNTVTYNSLIKPLCRARKIDEARGL 396


>29801.m003071 pentatricopeptide repeat-containing protein, putative
          Length = 827

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 40/77 (51%)

Query: 2   TYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKEM 61
           TY TLI    +    E   + +EEM+LSG   ++  F T++D +GK++    A+   KEM
Sbjct: 290 TYNTLISCCRRGSLYEEAAQVFEEMKLSGFSPDKVTFNTLLDVYGKSRRPKEAMEVLKEM 349

Query: 62  ERHGVPPDQKAKNVLLS 78
           E  G  P     N L+S
Sbjct: 350 EFSGFSPSIVTYNSLIS 366


>30098.m001706 pentatricopeptide repeat-containing protein, putative
          Length = 758

 Score = 48.5 bits (114), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 50/88 (56%), Gaps = 1/88 (1%)

Query: 1   VTYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKE 60
           V+Y T+I GY  I D+    + +++M++SGVK  +  + +++  +  N  F  A++ ++ 
Sbjct: 214 VSYNTMIVGYCAIGDVSKAKEFFDQMEVSGVKRERISWNSMISGYVDNFMFDEALNMFRN 273

Query: 61  MERHGVPPDQ-KAKNVLLSLAKTADEKE 87
           + + G+ PD     +VL + A TA  ++
Sbjct: 274 LLKEGIEPDSFTLGSVLTACADTASLRQ 301


>29983.m003250 pentatricopeptide repeat-containing protein, putative
          Length = 1029

 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 44/79 (55%)

Query: 1   VTYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKE 60
           V YG +I GYA+  +++  +K +  M+  G+ ANQ + T+++  + K   F SA   Y++
Sbjct: 658 VVYGAIINGYAEEGNVKEALKYFHMMEEYGISANQIVLTSLIKVYSKLGCFDSAKQLYQK 717

Query: 61  MERHGVPPDQKAKNVLLSL 79
           M      PD  A N ++SL
Sbjct: 718 MMCLEGGPDIIASNSMISL 736


>29851.m002466 pentatricopeptide repeat-containing protein, putative
          Length = 486

 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 42/77 (54%)

Query: 1   VTYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKE 60
           V Y T+I G+ KI ++E   +   EM+L+GV+AN   F  +++ +    D  SA+  +K 
Sbjct: 310 VAYNTVIGGFCKIGEIEKAEELSREMELNGVEANCVTFEHLINGYCSVGDVDSAILVFKH 369

Query: 61  MERHGVPPDQKAKNVLL 77
           M R G   +    +VL+
Sbjct: 370 MVRKGFRAEGSVMDVLI 386


>29780.m001348 pentatricopeptide repeat-containing protein, putative
          Length = 449

 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 44/89 (49%)

Query: 1   VTYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKE 60
           V Y +++  Y K     + M+   +M++ G + N  I+ +++D HG+ K+       +KE
Sbjct: 281 VAYSSIVAMYGKTGRTRDAMRLVAKMKVKGCEPNVWIYNSLLDMHGRVKNLRQVEKLWKE 340

Query: 61  MERHGVPPDQKAKNVLLSLAKTADEKEEA 89
           M+R  V PD+     +++    A E E  
Sbjct: 341 MKRRKVAPDKVTYTSVIAAYNKAKEFETC 369


>30147.m014056 pentatricopeptide repeat-containing protein, putative
          Length = 876

 Score = 47.4 bits (111), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 45/92 (48%)

Query: 1   VTYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKE 60
           VTY  LI  Y +   L + +  + EMQ  G + ++  + T++D H K      A+  Y+ 
Sbjct: 416 VTYNRLIHSYGRANYLNDAVDVFNEMQRVGCEPDRVTYCTLIDIHAKAGFLDFALEMYQR 475

Query: 61  MERHGVPPDQKAKNVLLSLAKTADEKEEANQL 92
           M+  G+ PD    +V+++    A     A++L
Sbjct: 476 MQAAGLSPDTFTYSVIINCLGKAGHLAAAHKL 507


>27965.m000110 pentatricopeptide repeat-containing protein, putative
          Length = 647

 Score = 47.4 bits (111), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 2/70 (2%)

Query: 1   VTYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKE 60
           VTY T+IKGY ++       +K + M+L  V  ++  + T++ A     DF S +  Y E
Sbjct: 250 VTYNTMIKGYCEVGKTRKAFEKLKAMELRNVAPDKITYMTLIQACYAEGDFDSCLGLYHE 309

Query: 61  MERHG--VPP 68
           M+  G  +PP
Sbjct: 310 MDEKGLEIPP 319


>29780.m001341 pentatricopeptide repeat-containing protein, putative
          Length = 533

 Score = 47.0 bits (110), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 1/88 (1%)

Query: 1   VTYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKE 60
           VTY +LI+G  + + L      ++EM    +  ++  +TT+++A+ K  D   A+  + E
Sbjct: 264 VTYSSLIQGLCEQRRLTEACDMFQEMLTIKLPPDEFTYTTLINAYCKEGDLNKALHLHDE 323

Query: 61  MERHGVPPDQKAKNVLLS-LAKTADEKE 87
           M + G  PD    NVL++ L K A  KE
Sbjct: 324 MIQKGFLPDAVTYNVLINGLNKQARSKE 351


>29736.m002066 pentatricopeptide repeat-containing protein, putative
          Length = 604

 Score = 46.2 bits (108), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 49/94 (52%)

Query: 2   TYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKEM 61
           TY T++ G  K  ++   +K  EEM+ +G+  +   +TT+MDA+ K  +   A    +EM
Sbjct: 357 TYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKTGEMVKARELLREM 416

Query: 62  ERHGVPPDQKAKNVLLSLAKTADEKEEANQLVGY 95
              G+ P     NVL++    + + E+  +L+ +
Sbjct: 417 LDRGLQPTVVTFNVLMNGLCMSGKLEDGERLLKW 450