Jatropha Genome Database

JcCB0549541.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0549541.10 - phase: 0 /pseudo
         (417 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30170.m014298 ornithine decarboxylase, putative                       357   6e-99
30170.m014299 ornithine decarboxylase, putative                       322   3e-88
29929.m004547 ornithine decarboxylase, putative                       253   2e-67
30170.m014294 arginine/diaminopimelate/ornithine decarboxylase, ...    82   3e-16
30170.m014295 ornithine decarboxylase, putative                        70   2e-12
30131.m007074 diaminopimelate decarboxylase, putative                  64   1e-10

>30170.m014298 ornithine decarboxylase, putative
          Length = 416

 Score =  357 bits (916), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 174/322 (54%), Positives = 233/322 (72%), Gaps = 5/322 (1%)

Query: 14  SSLKAISEASRLKGQQVVQIQKA--ALYSLIKS-ISDNQEEAEPFYLIDLGVVIRLMDKW 70
           +S++ I  A  ++G+ V  + K   +L   ++S I + Q   EPFY+++LG V  LMD W
Sbjct: 5   NSMQVIIAAPGVEGKTVKSLPKTEHSLTEFVQSVILNTQVTKEPFYVLNLGAVAELMDTW 64

Query: 71  NQSLPNVKPFYAVKCNTEPALLLSLATLGANFDCASQAEIETILGLGVNPDRIVYANPCK 130
           ++ LP ++PFYAVKCN+EP+LL +LA LG NFDCAS+ EI+TIL LGV+PDRIVYANPCK
Sbjct: 65  SRQLPMIQPFYAVKCNSEPSLLGALAALGCNFDCASKVEIQTILSLGVSPDRIVYANPCK 124

Query: 131 SASHIKYAARVGVNLTTFDSKQEIDKIKKWHPKCELLLRLKVPSENSS-WRSFGNKYGAL 189
           + SH+KYAA VGVNLTTFDS  E+DKI K HP+C LLLRLK P ++++ W S G+K+GAL
Sbjct: 125 AESHLKYAASVGVNLTTFDSVYELDKISKLHPRCALLLRLKSPDDSAAKWASLGSKFGAL 184

Query: 190 TEEVASLLQHANQAGLKVVGVSFHVGSIASDPQVYHSAIATARFAFDTAIKLEMPAMHIL 249
            +EV  LL+ A  A L V GVSFH+GS +++P  Y +AIA+A+ AFDTA +L MP M +L
Sbjct: 185 PQEVEPLLRAAQAANLTVSGVSFHIGSESTNPNAYRTAIASAKAAFDTAGRLGMPPMTLL 244

Query: 250 NIGGGFRANPLFDEIGKTVNDSVQEFFPDELTSLTMIAEPGRYFVETAFILVTNVIGKRV 309
           N+GGGF A   FDE    +N ++Q++F  E   L +I+EPGRYF ET F L  ++IGKRV
Sbjct: 245 NVGGGFTAGSFFDEAATVINSALQDYF-AEYPQLKVISEPGRYFAETVFTLAASIIGKRV 303

Query: 310 RGEQIDYWIDDGVHGSFNLGAY 331
           R +  +YW++DGV GSF   AY
Sbjct: 304 RDDVREYWLNDGVFGSFLCVAY 325


>30170.m014299 ornithine decarboxylase, putative
          Length = 416

 Score =  322 bits (824), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 165/319 (51%), Positives = 221/319 (69%), Gaps = 4/319 (1%)

Query: 12  NSSSLKAISEASRLKGQQVVQIQK--AALYSLIKSISDN-QEEAEPFYLIDLGVVIRLMD 68
           +S SL+ I +A  ++G+ V  + K  + L   ++SI  N Q   E FY++DLG V  LM 
Sbjct: 4   SSGSLQVILDAPGVQGKTVTTLSKDSSNLTDYVESIIVNTQVNRESFYVLDLGAVAGLMH 63

Query: 69  KWNQSLPNVKPFYAVKCNTEPALLLSLATLGANFDCASQAEIETILGLGVNPDRIVYANP 128
           KW++ LP ++P+YAVKCN+E +L+ +LA LG NFDCAS+AEI++IL LGV+PDRI+YANP
Sbjct: 64  KWSRELPMIQPYYAVKCNSEISLIGALAALGCNFDCASKAEIQSILSLGVSPDRIIYANP 123

Query: 129 CKSASHIKYAARVGVNLTTFDSKQEIDKIKKWHPKCELLLRLKVPSENSSWRSFGNKYGA 188
            K  SHI YAA V VNLTTFDSK E+ KI K HPKC LL+R+K P ++ +    G+K+GA
Sbjct: 124 SKPESHIIYAANVDVNLTTFDSKHELHKISKCHPKCSLLIRIKPPDDSGARWPLGSKFGA 183

Query: 189 LTEEVASLLQHANQAGLKVVGVSFHVGSIASDPQVYHSAIATARFAFDTAIKLEMPAMHI 248
           L EE+  LL  A  A L + GVSFH+GS + +P  Y  AI  A+  FDTA +L MP M +
Sbjct: 184 LPEEIEPLLLAAQAAKLTISGVSFHIGSESRNPHAYRGAIGAAKHVFDTASRLGMPPMRV 243

Query: 249 LNIGGGFRANPLFDEIGKTVNDSVQEFFPDELTSLTMIAEPGRYFVETAFILVTNVIGKR 308
           LNIGGGF A   FDE    +  ++Q++F D    + +I+EPGRYF ET F+L T++ GKR
Sbjct: 244 LNIGGGFIAGSNFDEAATVIKAALQDYFGDN-PGIEIISEPGRYFAETVFMLATSITGKR 302

Query: 309 VRGEQIDYWIDDGVHGSFN 327
           VRG  I+YWI+DGV GSF+
Sbjct: 303 VRGGIIEYWINDGVFGSFS 321


>29929.m004547 ornithine decarboxylase, putative
          Length = 203

 Score =  253 bits (645), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 121/180 (67%), Positives = 149/180 (82%), Gaps = 1/180 (0%)

Query: 1   MAFNMVDVNA-LNSSSLKAISEASRLKGQQVVQIQKAALYSLIKSISDNQEEAEPFYLID 59
           MAFN  + +  LN   LK I EASR+K Q+ V++ + +L SL  SIS+NQEEAEPFY++D
Sbjct: 1   MAFNPDNSDGHLNPIRLKVILEASRVKDQEAVEVPRGSLNSLNMSISENQEEAEPFYILD 60

Query: 60  LGVVIRLMDKWNQSLPNVKPFYAVKCNTEPALLLSLATLGANFDCASQAEIETILGLGVN 119
           +GVVI L++KW+  LP+VKPFYAVK N E ALL+ LATLGANFDCASQAEIE ILGLG++
Sbjct: 61  IGVVISLVEKWSHHLPHVKPFYAVKRNNESALLIVLATLGANFDCASQAEIEAILGLGIS 120

Query: 120 PDRIVYANPCKSASHIKYAARVGVNLTTFDSKQEIDKIKKWHPKCELLLRLKVPSENSSW 179
           PDRI+YANPCKS SHIKYAARVGV LTTFDSK+E+DKI+KWHP+C LLLR ++ ++ SSW
Sbjct: 121 PDRILYANPCKSVSHIKYAARVGVYLTTFDSKEEVDKIRKWHPQCSLLLRAEIQNDKSSW 180


>30170.m014294 arginine/diaminopimelate/ornithine decarboxylase,
           putative
          Length = 121

 Score = 82.4 bits (202), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 40/70 (57%), Positives = 49/70 (70%)

Query: 182 FGNKYGALTEEVASLLQHANQAGLKVVGVSFHVGSIASDPQVYHSAIATARFAFDTAIKL 241
            G KYGAL EEV  LLQ A  AGLKVVGVSFH+GS A+  + Y   IA A+  F+TA +L
Sbjct: 23  LGLKYGALPEEVVPLLQAAQAAGLKVVGVSFHIGSAATHSRAYRGDIAAAKNVFETAARL 82

Query: 242 EMPAMHILNI 251
            MP M++LN+
Sbjct: 83  GMPKMNVLNV 92


>30170.m014295 ornithine decarboxylase, putative
          Length = 78

 Score = 70.5 bits (171), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/45 (62%), Positives = 38/45 (84%)

Query: 67  MDKWNQSLPNVKPFYAVKCNTEPALLLSLATLGANFDCASQAEIE 111
           MDKW ++LP V+P YAVKCN EP  + +LATLG+NFDCAS+A+++
Sbjct: 1   MDKWTRTLPMVRPLYAVKCNPEPTPVGTLATLGSNFDCASRADLK 45


>30131.m007074 diaminopimelate decarboxylase, putative
          Length = 488

 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 84/338 (24%), Positives = 141/338 (41%), Gaps = 37/338 (10%)

Query: 13  SSSLKAISEASRLKGQQVVQIQK-------AALYSLIKSISDNQEEAE--PFYLIDLGVV 63
           S +LKA+   +    Q+  Q +          LY     + D  E  E  PFYL     +
Sbjct: 47  SLTLKAVLSQNPTLTQETAQFKHCFTKSNDGFLYCENLKVQDVMESVEKRPFYLYSKPQI 106

Query: 64  IRLMDKWNQSLPNVKPF--YAVKCNTEPALLLSLATLGANFDCASQAEIETILGLGVNPD 121
            R ++ +  +L  +     YA+K N    +L  L  LG      S  E+   L  G +P 
Sbjct: 107 TRNVEAYKSALEGLNSIIGYAIKANNNFKILEHLRQLGCGAVLVSGNELRLALRAGYDPK 166

Query: 122 RIVYANPCKSASHIKYAARVGVNLTTFDSKQEIDKI----KKWHPKCELLLRLK--VPSE 175
           + ++    K    +  AA  GV     DS+ +++ I    +    K  +LLR+   V  +
Sbjct: 167 KCIFNGNGKLLEDLVLAAEEGV-FVNVDSEFDLENIVAASRIAGEKINVLLRINPDVDPQ 225

Query: 176 NSSWRSFGN---KYGALTEEVASLLQ----HANQAGLKVVGVSFHVGSIASDPQVYHSAI 228
              + + GN   K+G   E++   L     H N+  LK+VG   H+GS  +   ++  A 
Sbjct: 226 VHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNE--LKLVGAHCHLGSTITKVDIFRDA- 282

Query: 229 ATARFAFDTAIKLEMPAMHILNIGGG-----FRANPLFDEIGKTVNDSVQEFFPDELTSL 283
           A     +   I+ +   +  LNIGGG     + A  +     + + D+V+E       +L
Sbjct: 283 AVLMVNYIDEIRAQGFEIDYLNIGGGLGIDYYHAGAVL-PTPRDLIDTVRELVLSR--NL 339

Query: 284 TMIAEPGRYFVETAFILVTNVIGKRVRGEQIDYWIDDG 321
            +I EPGR  +     LV  V G +  G + ++ + DG
Sbjct: 340 NLIIEPGRSLIANTCCLVNRVTGVKTNGTK-NFIVIDG 376