Jatropha Genome Database

JcCB0549071.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0549071.10 + phase: 2 /partial
         (186 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28176.m000270 acyl-CoA dehydrogenase, putative                        328   8e-91
30111.m000733 acyl-CoA dehydrogenase, putative                         77   5e-15
35174.m000020 acyl-CoA dehydrogenase, putative                         58   3e-09
35800.m000029 acyl-CoA dehydrogenase, putative                         54   4e-08
31799.m000015 acyl-CoA dehydrogenase, putative                         47   4e-06

>28176.m000270 acyl-CoA dehydrogenase, putative
          Length = 440

 Score =  328 bits (841), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 150/170 (88%), Positives = 164/170 (96%)

Query: 1   VRMKVRECMEKEVAPIMAEYWEKASFPFHVIPKLGSLRIAGGTIKGYGCPGMSLAGSAIA 60
           +R+KVR+CMEKE+APIM EYWEKA FPFHVIPKLG+LRIAGGTIKGYGCPG+SL GSA+A
Sbjct: 63  IRIKVRQCMEKEIAPIMTEYWEKAKFPFHVIPKLGTLRIAGGTIKGYGCPGLSLTGSAVA 122

Query: 61  TAEVARVDASCSTFILVHSSLAMLTIALCGSEVQKQKYLPSLAQLSTIACWALTEPDYGS 120
           TAEVARVDASCSTFILVHSSLAMLTIALCGSE QKQKYLPSLAQLST+ACWALTEP+YGS
Sbjct: 123 TAEVARVDASCSTFILVHSSLAMLTIALCGSEAQKQKYLPSLAQLSTVACWALTEPEYGS 182

Query: 121 DASALKTTANKVEGGWVLEGQKRWIGNSTFADLLVIFARNTSTNQINGYV 170
           DASALKTTA KVEGGW+L+GQKRWIGNSTFAD+LV+FARNTST QINGY+
Sbjct: 183 DASALKTTARKVEGGWILDGQKRWIGNSTFADVLVVFARNTSTEQINGYI 232


>30111.m000733 acyl-CoA dehydrogenase, putative
          Length = 406

 Score = 77.0 bits (188), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 39/101 (38%), Positives = 57/101 (56%)

Query: 59  IATAEVARVDASCSTFILVHSSLAMLTIALCGSEVQKQKYLPSLAQLSTIACWALTEPDY 118
           IA  E++R   S +     HS+L +  +   GS  QKQKYLP L     +   A++EP+ 
Sbjct: 98  IAMEEISRASGSVALSYGAHSNLCINQLVRNGSPAQKQKYLPKLISGEHVGALAMSEPNA 157

Query: 119 GSDASALKTTANKVEGGWVLEGQKRWIGNSTFADLLVIFAR 159
           GSD  ++K  A+ V+GG++L G K W  N   A  LVI+A+
Sbjct: 158 GSDVVSMKCKADCVDGGYILNGNKMWCTNGPVAQTLVIYAK 198


>35174.m000020 acyl-CoA dehydrogenase, putative
          Length = 367

 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 68/150 (45%), Gaps = 4/150 (2%)

Query: 20  YWEKASFPFHVIPKLGSLRIAGGTI-KGYGCPGMSLAGSAIATAEVARVDASCSTFILVH 78
           Y E    P  V   L  +   G  I + YG   +    S     E+AR+      F+   
Sbjct: 19  YHETGEVPEQVESTLREMGFYGMAIPEAYGGMPVDHLTSVAVQLELARLPPQFWPFVRSA 78

Query: 79  SSLAMLTIALCGSEVQKQKYLPSLAQLSTIACWALTEPDYGSDASALKTTANKVEGGWVL 138
               +  I   GSE  K+K+LP +A   +  C A+TEP  GSDA+ + T+A +    +VL
Sbjct: 79  IGPGVHIIVDHGSEALKKKWLPEIASGRSRNCIAITEPHAGSDAARMLTSARREGDHYVL 138

Query: 139 EGQKRWIGNSTFADLLVIFARNTSTNQING 168
            G K +I N+  A  + + A   ST++  G
Sbjct: 139 NGTKTFISNANHAHSITVLA---STDRAAG 165


>35800.m000029 acyl-CoA dehydrogenase, putative
          Length = 404

 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 74/160 (46%), Gaps = 15/160 (9%)

Query: 9   MEKEVAPIMAEYWEKASFPFHVIPKLGSLRIAGGTIKGYGCPGMSLAGSAIATAEVARVD 68
           M K + P+  +  ++  +  H+ P+LG         KG+G   ++L    I  +  A V 
Sbjct: 1   MRKVIDPLKQQVKDRGLWATHLPPELGG--------KGFGQVKLALINEIIGYSNWAPVI 52

Query: 69  ASCSTFILVHSSLAMLTIALCGSEVQKQKYLPSLAQLSTIACWALTEPDYGSDASALKTT 128
                    ++ +    +A  G+E QK+KYL  L      +C+++TEP  GSD     T 
Sbjct: 53  FGIQGPDTGNAEI----LAHYGTEEQKKKYLQPLLNGEIFSCFSMTEPQCGSDPQQFTTR 108

Query: 129 ANKVEGGWVLEGQKRW---IGNSTFADLLVIFARNTSTNQ 165
           A +    WV+ G+K +   I N++F  ++ I   + S ++
Sbjct: 109 AVRDGNDWVINGEKFFSSNINNASFTIVMTITNPDVSVHK 148


>31799.m000015 acyl-CoA dehydrogenase, putative
          Length = 355

 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 67/137 (48%), Gaps = 1/137 (0%)

Query: 24  ASFPFHVIPKLGSLRIAGGTIK-GYGCPGMSLAGSAIATAEVARVDASCSTFILVHSSLA 82
           +S+P+ +  KL    + G TIK   G  G +L  + IA  E+A V    +  +   +  A
Sbjct: 5   SSYPWDIARKLAEQGLLGITIKEADGGIGGTLMDAVIAIQELAYVCPKSADVVQAGNFGA 64

Query: 83  MLTIALCGSEVQKQKYLPSLAQLSTIACWALTEPDYGSDASALKTTANKVEGGWVLEGQK 142
           + T A   S   KQ++LP L     +    ++EP+ GS  + LK +A +    +V+ G K
Sbjct: 65  IRTFAEYASPELKQRFLPDLLSGRALLGLGMSEPEAGSATTELKCSAVEDGDHYVINGTK 124

Query: 143 RWIGNSTFADLLVIFAR 159
            +  +S  A + +I+ R
Sbjct: 125 VFSTHSGDATVYLIYVR 141