Jatropha Genome Database

JcCB0548251.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0548251.10 + phase: 1 /pseudo/partial
         (228 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29647.m002022 TRANSPORT INHIBITOR RESPONSE 1 protein, putative        417   e-117
30131.m006863 TRANSPORT INHIBITOR RESPONSE 1 protein, putative        255   1e-68
29933.m001427 TRANSPORT INHIBITOR RESPONSE 1 protein, putative        236   6e-63
29908.m006223 TRANSPORT INHIBITOR RESPONSE 1 protein, putative        210   5e-55
29610.m000411 Coronatine-insensitive protein, putative                 79   2e-15
29726.m003935 TRANSPORT INHIBITOR RESPONSE 1 protein, putative         51   3e-07
30170.m013826 skip-2, putative                                         49   3e-06

>29647.m002022 TRANSPORT INHIBITOR RESPONSE 1 protein, putative
          Length = 585

 Score =  417 bits (1071), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 201/219 (91%), Positives = 210/219 (95%)

Query: 1   SEVSFSALERLVGRCPNLRTLRLNRTVPLDRLANILSRAPQLVELGTGTYSSELRPDVFS 60
           SEVSFSAL+RLVGRCPNLRTLRLNR VPLDRLANIL RAPQLVELGTG YS+ELRPDVFS
Sbjct: 196 SEVSFSALKRLVGRCPNLRTLRLNRAVPLDRLANILRRAPQLVELGTGAYSAELRPDVFS 255

Query: 61  SLSGAFSGCKELKSLSGFWDVVPGYLPAIYPICSGLTSLNLSYATIQSPDVIKLVSQCQS 120
           +LSGAFSGCKELKSLSGFWDVVPGYLPAIYPICSGLTSLNLSYATIQSPD++KLVSQCQS
Sbjct: 256 TLSGAFSGCKELKSLSGFWDVVPGYLPAIYPICSGLTSLNLSYATIQSPDLVKLVSQCQS 315

Query: 121 LQRLWVLDYIEDIGLEALATFCKDLRELRVFPSEPFAVEPNVSLTEQGLVSVSEGCPKLQ 180
           LQRLWVLDYIED+GLEALATFCKDLRELRVFPS+PF  EPNVSLTEQGLV VSEGCPKLQ
Sbjct: 316 LQRLWVLDYIEDVGLEALATFCKDLRELRVFPSDPFGPEPNVSLTEQGLVVVSEGCPKLQ 375

Query: 181 SVLYFCHQMTNDALITVARNRPNMTRFRLCIMEPRTPDT 219
           SVLYFC QMTNDALIT+ARNRPNMTRFRLCI+EPR PD 
Sbjct: 376 SVLYFCRQMTNDALITIARNRPNMTRFRLCIIEPRMPDN 414


>30131.m006863 TRANSPORT INHIBITOR RESPONSE 1 protein, putative
          Length = 571

 Score =  255 bits (652), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 126/220 (57%), Positives = 159/220 (72%), Gaps = 3/220 (1%)

Query: 1   SEVSFSALERLVGRCPNLRTLRLNRTVPLDRLANILSRAPQLVELGTGTYSSELRPDVFS 60
            +++   LERLV R PNLR+LRLNR VPLD L  IL +APQLV+LG G+Y  +   + +S
Sbjct: 191 GDINLGVLERLVARSPNLRSLRLNRAVPLDTLQKILMQAPQLVDLGVGSYVHDPDSETYS 250

Query: 61  SLSGAFSGCKELKSLSGFWDVVPGYLPAIYPICSGLTSLNLSYA-TIQSPDVIKLVSQCQ 119
            L  A   CK ++SLSGF DV P  LPA + +C  LTSLNLSYA  IQ  ++ KL+  C+
Sbjct: 251 KLVAAVQKCKSVRSLSGFLDVAPHCLPAFHLMCPNLTSLNLSYAPGIQGSELTKLIRHCR 310

Query: 120 SLQRLWVLDYIEDIGLEALATFCKDLRELRVFPSEPFAVEPNVSLTEQGLVSVSEGCPKL 179
            LQRLW+LD I D GLE +A+ CKDL+ELRVFPS+ +    N ++TE+GLV++S GCPKL
Sbjct: 311 KLQRLWILDCIGDKGLEVVASTCKDLQELRVFPSDLYV--GNAAVTEEGLVAISSGCPKL 368

Query: 180 QSVLYFCHQMTNDALITVARNRPNMTRFRLCIMEPRTPDT 219
            S+LYFC QMTN ALITVA+N PN TRFRLCI++P  PD 
Sbjct: 369 DSILYFCQQMTNAALITVAKNCPNFTRFRLCILDPTKPDA 408


>29933.m001427 TRANSPORT INHIBITOR RESPONSE 1 protein, putative
          Length = 589

 Score =  236 bits (602), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 114/218 (52%), Positives = 150/218 (68%)

Query: 1   SEVSFSALERLVGRCPNLRTLRLNRTVPLDRLANILSRAPQLVELGTGTYSSELRPDVFS 60
           SEV+F ALERLV R  +L+ L++N+ + L++L  +L+  PQL ELGTG++S EL    F+
Sbjct: 211 SEVNFDALERLVSRSKSLKVLKVNKNISLEQLQRLLACTPQLTELGTGSFSQELTARQFT 270

Query: 61  SLSGAFSGCKELKSLSGFWDVVPGYLPAIYPICSGLTSLNLSYATIQSPDVIKLVSQCQS 120
            +   FS CK L +LSG W+ +  YLP +YP C+ LT LNLSYA +QS ++  L+  C  
Sbjct: 271 EVENTFSHCKNLDTLSGLWEAMAPYLPVLYPACTNLTFLNLSYAALQSLELANLLRHCPQ 330

Query: 121 LQRLWVLDYIEDIGLEALATFCKDLRELRVFPSEPFAVEPNVSLTEQGLVSVSEGCPKLQ 180
           L+RLWVLD IED GLE++ + C  L ELRVFP++PF  E    +TE G V+VS GC +L 
Sbjct: 331 LRRLWVLDTIEDKGLESVGSNCPLLEELRVFPADPFEEEIIHGVTEAGFVAVSYGCRRLH 390

Query: 181 SVLYFCHQMTNDALITVARNRPNMTRFRLCIMEPRTPD 218
            VLYFC QMTN A+ T+ +N PN T FRLCIM PR PD
Sbjct: 391 YVLYFCRQMTNAAVATIVQNCPNFTHFRLCIMNPRQPD 428


>29908.m006223 TRANSPORT INHIBITOR RESPONSE 1 protein, putative
          Length = 635

 Score =  210 bits (534), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 109/224 (48%), Positives = 146/224 (65%), Gaps = 13/224 (5%)

Query: 3   VSFSALERLVGRCPNLRTLRLNRTVPLDRLANILSRAPQLVELGTGTY--------SSEL 54
           ++F ALERLV R P+L+ +RLNR V + +L  ++ RAPQL  LGTG++          E 
Sbjct: 257 INFDALERLVARSPSLKKIRLNRYVSVSQLYRLMIRAPQLTHLGTGSFRPSDDAAAQGEQ 316

Query: 55  RPDVFSSLSGAFSGCKELKSLSGFWDVVPGYLPAIYPICSGLTSLNLSYATIQSPDVIKL 114
            PD  S    AF+ CK L  LSGF +++  YLPAIYP+C+ L SLNLSYA I +  +  +
Sbjct: 317 EPDYAS----AFAACKSLVCLSGFKEILSDYLPAIYPVCANLNSLNLSYANITADQLKPI 372

Query: 115 VSQCQSLQRLWVLDYIEDIGLEALATFCKDLRELRVFPSEPFAVEPNVSLTEQGLVSVSE 174
           +S C  LQ  WVLD I D GL+A+A  CK+LRELRVFP +    +    ++E GL ++SE
Sbjct: 373 ISNCHKLQTFWVLDSICDEGLQAVAATCKELRELRVFPIDARE-DSEGPVSEVGLQAISE 431

Query: 175 GCPKLQSVLYFCHQMTNDALITVARNRPNMTRFRLCIMEPRTPD 218
           GC KLQS+LYFC  MTN A+I +++N P++  FRLCIM    PD
Sbjct: 432 GCRKLQSILYFCQHMTNAAVIAMSKNCPDLVVFRLCIMGRHRPD 475


>29610.m000411 Coronatine-insensitive protein, putative
          Length = 602

 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 109/224 (48%), Gaps = 12/224 (5%)

Query: 3   VSFSALERLVGRCPNLRTLRLNRTVPLDRLANILSRAPQLVEL--GTGTYSSELRPDVFS 60
           V F  LE +   C  L +++++    LD LA     A  L E   G+  YS+    D +S
Sbjct: 214 VRFEDLEIIAKNCRCLVSVKISDCEILD-LAGFFHAAAALEEFCGGSFNYSANDLQDKYS 272

Query: 61  SLSGAFSGCKELKSLSGFWDVVPGYLPAIYPICSGLTSLNLSYATIQSPDVIKLVSQCQS 120
           +++     C+      G   +    +P ++P  S L  L+L YA + + D   L+ +  +
Sbjct: 273 AVTFPRKLCR-----LGLTYLGKNEMPIVFPFASLLKKLDLLYALLDTEDHCLLIQKFCN 327

Query: 121 LQRLWVLDYIEDIGLEALATFCKDLRELRV--FPSEPFAVEPNVSLTEQGLVSVSEGCPK 178
           L+ L   + I D GLE LA+ CK L+ LR+     E    +    ++ +GL+++++GC +
Sbjct: 328 LEVLETRNVIGDRGLEVLASSCKRLKRLRIERGADEQGMEDEEGIVSHRGLIALAQGCLE 387

Query: 179 LQSVLYFCHQMTNDALITVARNRPNMTRFRLCIM--EPRTPDTP 220
           L+ +  +   +TN AL  +  +  N+  FRL ++  E R  D P
Sbjct: 388 LEYLAVYVSDITNAALEHIGAHLKNLNDFRLVLLDKEERITDLP 431


>29726.m003935 TRANSPORT INHIBITOR RESPONSE 1 protein, putative
          Length = 601

 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 65/129 (50%), Gaps = 13/129 (10%)

Query: 86  LPAIYPICSGLTSLNLSYA-TIQSPDVIKLVSQC-QSLQRLWVLDYIE--DIGLEALATF 141
           L  +   C  L  LNL +  ++    +I+L   C +SL+ L V   ++  DI LEA+ ++
Sbjct: 174 LAVVGKCCKQLEDLNLRFCESLTDTGLIELAQGCGKSLKSLGVAACVKITDISLEAVGSY 233

Query: 142 CKDLRELRVFPSEPFAVEPNVSLTEQGLVSVSEGCPKLQSVLYFCHQMTNDALITVARNR 201
           CK L  L    SE        S+   G++S+++GCP L+ +   C  +T++ALI V    
Sbjct: 234 CKSLETLS-LDSE--------SIHTSGVLSIAQGCPSLKVLKLQCTNVTDEALIAVGTCC 284

Query: 202 PNMTRFRLC 210
            ++    LC
Sbjct: 285 LSLELLALC 293


>30170.m013826 skip-2, putative
          Length = 536

 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 74/151 (49%), Gaps = 19/151 (12%)

Query: 68  GCKELKSL-----SGFWDVVPGYLPAIYPICSGLTSLNLSYATIQSPDV-IKLVSQCQSL 121
           G K L++L     SG WD +   L  I    +G+  ++L    +Q  DV +  +S C  L
Sbjct: 245 GSKNLRTLKLFRCSGDWDKL---LQVISDRVTGMVEIHLER--LQVSDVGLSAISNCLDL 299

Query: 122 QRLWVLDYIE--DIGLEALATFCKDLRELRVFPSEPFAVEPNVSLTEQGLVSVSEGCPKL 179
           + L ++   E  ++GL ++A  CK LR+L +   +   +       + GL++V++ CP L
Sbjct: 300 EILHLVKTPECTNLGLGSIAERCKLLRKLHIDGWKANRI------GDDGLIAVAKNCPNL 353

Query: 180 QSVLYFCHQMTNDALITVARNRPNMTRFRLC 210
           Q ++      T  +L  +A N  N+ R  LC
Sbjct: 354 QELVLIGVNPTKSSLEMLASNCQNLERLALC 384