Jatropha Genome Database

JcCB0545221.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0545221.10 + phase: 1 /partial
         (291 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29794.m003359 conserved hypothetical protein                          380   e-106
30146.m003441 hypothetical protein                                    184   5e-47

>29794.m003359 conserved hypothetical protein
          Length = 720

 Score =  380 bits (975), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 201/294 (68%), Positives = 219/294 (74%), Gaps = 15/294 (5%)

Query: 2   PEKPNHKMECSAENAIGKTSFSSAKNGSQPSNNGSYLGNPPPVPVPTDSKMSPWCFQHSL 61
           PEK NH ME SAENA+GK  FSS KNGSQPSN G Y GNP PVPV  DSKM+PWCFQHSL
Sbjct: 438 PEKLNHNMEYSAENAVGK--FSSVKNGSQPSNCGPYTGNPKPVPVAADSKMAPWCFQHSL 495

Query: 62  GHQWLVPVMSPSEGLVYKPYNAPGFLGSACGGCGPFGASPMVGNFINPTYGIPPSSHHHQ 121
           GHQWLVPVMSPSEGLVYKPY APGF+GS CGGC PFG SP+ GNF++PTYG+P S H HQ
Sbjct: 496 GHQWLVPVMSPSEGLVYKPYAAPGFMGSVCGGCRPFGPSPVTGNFMDPTYGVPASHHPHQ 555

Query: 122 GTGFIPGV----HGYFPPYGMPVMHPAMSGSAVEQMNYFXXXXXXXXXXXXXXXXANFNV 177
           GT  +PGV    HGYFPPYGMP+M   M GSAVEQMNY+                AN  V
Sbjct: 556 GTMPMPGVPALGHGYFPPYGMPIMSSTMPGSAVEQMNYY------GQAGQLSGGGANIVV 609

Query: 178 QHQSSCNLPNQKSGSVPQVPKFRASKDTELRGSTASSPGERVQGVGTVEAAEGRDALLLF 237
           QH S   L  QKSGS+P+V K RASKDTELRGSTASSP ERVQG G  +AAE RD L LF
Sbjct: 610 QHPS---LQLQKSGSIPRVNKPRASKDTELRGSTASSPSERVQGAGNAQAAETRDPLPLF 666

Query: 238 PVAPATPEGASQPQETDMPTRVIKVVPHNPRSATESAARIFKSIQAERKHKNSI 291
           P AP   EGA+QPQ T+ P  VIKVVPHN RSATESAARIF+SIQ ERK  ++I
Sbjct: 667 PTAPIALEGATQPQLTNQPRGVIKVVPHNRRSATESAARIFQSIQEERKQNDTI 720


>30146.m003441 hypothetical protein
          Length = 783

 Score =  184 bits (466), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 127/301 (42%), Positives = 158/301 (52%), Gaps = 31/301 (10%)

Query: 3   EKPNHKMECSAENAIGKTSFSSAKNG------SQPSNNGSYLGNPPPVPVPTDSKMSPWC 56
           +KP+   E + ENA+ K S S+  N       +  SN GS  G   P PV T+S  SPWC
Sbjct: 496 QKPHSSTEFAEENAVAKLSLSAVNNEVSKGLHTNQSNYGSDSGGHLPAPVATNSGPSPWC 555

Query: 57  FQHSLGHQWLVPVMSPSEGLVYKPYNAP-----GFLGSACGGCGPFGASPMVGNFINPTY 111
           F     +QWLVPVMSPSEGLVYKPY  P     GF+    G C P       G+FIN  Y
Sbjct: 556 FPPP-SNQWLVPVMSPSEGLVYKPYTGPCPPTAGFMAQVYGNCAPVSLDGEHGDFINGAY 614

Query: 112 GIPPSSHHHQGTGFIPGV----HGYFPPYGMPVMHPAMSGSAVEQMNYFXXXXXXXXXXX 167
           G+  S  H  G G +P        YFPPYGMPVM P++SG    Q++ F           
Sbjct: 615 GVQAS--HQNGIGILPSDPPLGQNYFPPYGMPVMTPSISGLLFGQVSPFNGPQSKGNQLS 672

Query: 168 XXXXXANFNVQHQSSCNLPNQKSGSVPQVPKFRASKDTELRGSTASSPGERVQGVGTVEA 227
                  F  Q     +    +  S      F+ SK+++++GSTASSP E ++G      
Sbjct: 673 LGDMNFTFPQQSSCHISSSMSRVISCC-AENFQPSKESKVQGSTASSPSESLKG------ 725

Query: 228 AEGRDALLLFPVAPATPEGASQPQETDMP-TRVIKVVPHNPRSATESAARIFKSIQAERK 286
               DAL LFP+ P T + + Q  +TD   TRVIKVVPHN RSATESAARIF+ IQ ERK
Sbjct: 726 ----DALPLFPIEP-TAQASDQNGQTDAQWTRVIKVVPHNARSATESAARIFRFIQEERK 780

Query: 287 H 287
            
Sbjct: 781 Q 781