Jatropha Genome Database

JcCB0543221.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0543221.10 - phase: 2 /partial
         (149 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29729.m002354 superoxide dismutase [mn], putative                     279   4e-76
29729.m002353 superoxide dismutase [mn], putative                     234   1e-62
33549.m000044 superoxide dismutase [fe], putative                      78   2e-15
29799.m000633 superoxide dismutase [fe], putative                      77   4e-15
30147.m014368 superoxide dismutase [fe], putative                      62   9e-11

>29729.m002354 superoxide dismutase [mn], putative
          Length = 234

 Score =  279 bits (713), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 134/147 (91%), Positives = 140/147 (95%)

Query: 1   GLKTFSLPDLANDYSALEPVISAEIMQLHHQKHHQTYITNYNKSLELLNEAMNKGDSASV 60
           GLKTF+LPDL  DYSALEPVIS EIMQLHHQKHHQTYITNYNKSLELLNEAM KGDS+SV
Sbjct: 28  GLKTFTLPDLPYDYSALEPVISGEIMQLHHQKHHQTYITNYNKSLELLNEAMEKGDSSSV 87

Query: 61  VKLQSAIKFNGGGHINHSIFWKNLAPVREGGGEPPHGSLGWAIDEDFGSLEKLIQKISTE 120
           VKLQSAIKFNGGGHINHSIFW NLAPVREGGGEPPHGSLGWAID DFGSLEKLIQK++TE
Sbjct: 88  VKLQSAIKFNGGGHINHSIFWNNLAPVREGGGEPPHGSLGWAIDTDFGSLEKLIQKMNTE 147

Query: 121 GAAVQGSGWVWLGLDKEAKKLVVETTA 147
           GAAVQGSGWVWLG+DK +KKLVVETTA
Sbjct: 148 GAAVQGSGWVWLGVDKASKKLVVETTA 174


>29729.m002353 superoxide dismutase [mn], putative
          Length = 239

 Score =  234 bits (597), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 113/146 (77%), Positives = 126/146 (86%)

Query: 1   GLKTFSLPDLANDYSALEPVISAEIMQLHHQKHHQTYITNYNKSLELLNEAMNKGDSASV 60
            LKT +LPDL   Y ALEP IS EIM LHHQKHH  Y+TNYNKSLELLN+A+  GDS+SV
Sbjct: 33  ALKTLTLPDLPYAYDALEPFISGEIMFLHHQKHHLAYVTNYNKSLELLNQAIANGDSSSV 92

Query: 61  VKLQSAIKFNGGGHINHSIFWKNLAPVREGGGEPPHGSLGWAIDEDFGSLEKLIQKISTE 120
           VKLQS+IKFNGGGHINHSIFWKNLAPV EGGG PPHGSL  AID +FGSLEKLIQK++ E
Sbjct: 93  VKLQSSIKFNGGGHINHSIFWKNLAPVSEGGGIPPHGSLASAIDTEFGSLEKLIQKMNAE 152

Query: 121 GAAVQGSGWVWLGLDKEAKKLVVETT 146
           GAAV+GSGWVWLG+DK++KKLVV TT
Sbjct: 153 GAAVEGSGWVWLGVDKDSKKLVVATT 178


>33549.m000044 superoxide dismutase [fe], putative
          Length = 244

 Score = 77.8 bits (190), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 67/130 (51%), Gaps = 4/130 (3%)

Query: 14  YSALEPVISAEIMQLHHQKHHQTYITNYNKSLELLNEAMNKGDSASVVKLQSAIKFNGGG 73
           Y ALEP I A  ++LH+  HH+  +   NK+ + L +A +  D A V   +  + F    
Sbjct: 54  YDALEPAIDARTVELHYNFHHKPAVAAANKAEDALAKARDSNDFALVKFYEKELAFQLSS 113

Query: 74  HINHSIFWKNLAPVREGGGEPPHGSLGWAIDEDFGSLEKLIQKISTEGAAVQGSGWVWLG 133
           HI H+++W +++    G G  P G L  AID +FGS  K   ++     AV+ SGW  +G
Sbjct: 114 HILHTVYWTSIS----GKGGEPKGDLAKAIDRNFGSYAKFKGQLIAATVAVEASGWGVVG 169

Query: 134 LDKEAKKLVV 143
                 +L++
Sbjct: 170 YHPATGRLMI 179


>29799.m000633 superoxide dismutase [fe], putative
          Length = 265

 Score = 76.6 bits (187), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 75/160 (46%), Gaps = 29/160 (18%)

Query: 1   GLKTFSLPDLANDYSALEPVISAEIMQLHHQKHHQTYITNYNKSL------------ELL 48
           GLKT   P       ALEP +S + +++H  +HH+ Y+   NK L            EL+
Sbjct: 53  GLKTPPYP-----LDALEPYMSRKTLEIHWGEHHRAYVEGLNKQLAKDDILYGYTMDELV 107

Query: 49  NEAMNKGDSASVVKLQSAIKFNGGGHI-NHSIFWKNLAPVREGGGEPPHGSLGWAIDEDF 107
               N G+           +FN    + NH  FW+++ P    GGE P   +   I++DF
Sbjct: 108 KVTYNNGNPFP--------EFNNAAQVWNHDFFWESMQP---AGGEMPELGVLQQIEKDF 156

Query: 108 GSLEKLIQKISTEGAAVQGSGWVWLGLDKEAKKLVVETTA 147
           GS     +K   E   + GSGW+WL L +E ++L +  T+
Sbjct: 157 GSFTNFKEKFIEEALTLFGSGWIWLVLKREERQLAIIKTS 196


>30147.m014368 superoxide dismutase [fe], putative
          Length = 305

 Score = 62.0 bits (149), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 63/145 (43%), Gaps = 23/145 (15%)

Query: 16  ALEPVISAEIMQLHHQKHHQTYITNYNKSL-----------ELLNEAMNKGDSASVVKLQ 64
           ALEP++S + ++ H  KHH+ Y+ N NK +           +++    NKGD        
Sbjct: 61  ALEPLMSKDTLEYHWGKHHRAYVDNLNKQIVGTELDGMSLEDVVLVTYNKGDMLPAFN-- 118

Query: 65  SAIKFNGGGHINHSIFWKNLAPVREGGGEPPHGSLGWAIDEDFGSLEKLIQKISTEGAAV 124
                N     NH  FW  + P   G      G L   I+ DFGS E+ +++     A  
Sbjct: 119 -----NAAQAWNHEFFWGCMKPGGGGKP---SGELLQLIERDFGSFERFVEEFKAAAATQ 170

Query: 125 QGSGWVWLGLDKEAKKLVVETTAKP 149
            GSGW WL    +A +L VE    P
Sbjct: 171 FGSGWAWLAY--KANRLDVENALNP 193