Jatropha Genome Database

JcCB0534371.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0534371.10 - phase: 0 
         (64 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29588.m000852 metal transporter, putative                              55   7e-09

>29588.m000852 metal transporter, putative
          Length = 546

 Score = 55.1 bits (131), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 30/45 (66%), Positives = 33/45 (73%), Gaps = 4/45 (8%)

Query: 1  MAG---SQSVQPQFIASTGNGSFSNAPLIENSD-VDQIIVPDVTS 41
          MAG   S   QPQFIASTGN SFSNAPLI+N D  DQI++PD  S
Sbjct: 1  MAGGSLSSGEQPQFIASTGNRSFSNAPLIDNPDSSDQIVIPDRKS 45