Jatropha Genome Database

JcCB0533111.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0533111.10 + phase: 0 /partial
         (106 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

27810.m000636 conserved hypothetical protein                          122   3e-29

>27810.m000636 conserved hypothetical protein
          Length = 1054

 Score =  122 bits (307), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 65/94 (69%), Positives = 72/94 (76%), Gaps = 7/94 (7%)

Query: 13  KDGFELPSRLSVSAADCILAITEALTKKNKVSSNNPKLLNSDALHRPISLVPAVSREKKA 72
           +DGFELPSRLSVSAADCILAI+EALTKK       PK LNS+A  RPISL P    E+K 
Sbjct: 192 QDGFELPSRLSVSAADCILAISEALTKK-------PKALNSNASDRPISLKPTSMGERKV 244

Query: 73  KPAHKSSEESTFDMAYLLWDLIGELITLTQRLLA 106
           KP  KS ++S FDMA+LLWDLI ELITL QRLLA
Sbjct: 245 KPTSKSLDDSNFDMAFLLWDLIKELITLVQRLLA 278