Jatropha Genome Database

JcCB0528831.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0528831.10 - phase: 1 /partial
         (229 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29820.m001006 breast cancer type 2 susceptibility protein brca2,...   264   3e-71

>29820.m001006 breast cancer type 2 susceptibility protein brca2,
           putative
          Length = 1156

 Score =  264 bits (674), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 143/238 (60%), Positives = 165/238 (69%), Gaps = 9/238 (3%)

Query: 1   EKQDSDNVCGFTNSLFSTGSGKSVNISSAGLVRAKTLLGLENNN-VSNFQGFQHPRKSPK 59
           E    +N  GFT+SLF TGSGKSVN+SSAGLVRAKTLLGLEN+N +S  +GFQHPRKS  
Sbjct: 103 ETHARENAHGFTHSLFCTGSGKSVNVSSAGLVRAKTLLGLENSNGISCSEGFQHPRKSTN 162

Query: 60  VNEQNEWQDLSYLRMKEDMDNSGMQSVSTP--------SLIGSKLSNAVTPNLLQSELHN 111
             EQN W +LS+  M + M+NS M  V+ P        SL G +LSN V PNLLQSE+HN
Sbjct: 163 APEQNVWPNLSHSTMNKGMENSAMHDVTVPRSSLISKTSLNGHELSNVVNPNLLQSEVHN 222

Query: 112 STPKPPPIKFHTAGGRSLSVSSDALERAKSLLGDPDLGTFLNEDDAVDPAHTVSKVCRLS 171
           S  KPP IKFHTAGGRSLSVSSDAL+RAKSLLGDPDLG FLNE+D VDPA +V    RL+
Sbjct: 223 SITKPPSIKFHTAGGRSLSVSSDALKRAKSLLGDPDLGNFLNEEDVVDPALSVFNENRLN 282

Query: 172 DASVMREANFHSAFTYPCAAKSKHIGKSFVXXXXXXXXXXXXXXXXENIISGISLIKK 229
           D S  +E +F S FTYP  AKSK+I K F+                EN ISG+SLIKK
Sbjct: 283 DTSSTKETDFRSTFTYPGIAKSKYISKVFISPLKSSSHQVQSSFNSENAISGVSLIKK 340