Jatropha Genome Database

JcCB0517161.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0517161.20 + phase: 0 /partial
         (217 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29648.m002002 pentatricopeptide repeat-containing protein, putative   275   1e-74
29872.m000549 pentatricopeptide repeat-containing protein, putative    60   8e-10
30055.m001579 pentatricopeptide repeat-containing protein, putative    54   4e-08
29825.m000330 pentatricopeptide repeat-containing protein, putative    54   7e-08
30147.m014056 pentatricopeptide repeat-containing protein, putative    52   2e-07
30006.m000285 pentatricopeptide repeat-containing protein, putative    49   2e-06
29680.m001750 pentatricopeptide repeat-containing protein, putative    49   2e-06
30174.m008794 pentatricopeptide repeat-containing protein, putative    48   3e-06

>29648.m002002 pentatricopeptide repeat-containing protein, putative
          Length = 441

 Score =  275 bits (703), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 140/191 (73%), Positives = 163/191 (85%), Gaps = 1/191 (0%)

Query: 27  RSFDSQLASATVTSSLLTVDLISDVFRSIPRFFFQSTRSIGRQNTTRHRSPLKQRNLKQE 86
           R FD QLAS+T TS L + +LISDV RSIPRFFFQSTRS+GRQ+TTRHRSPLKQR+LKQE
Sbjct: 22  RPFDIQLASSTTTSLL-SSNLISDVLRSIPRFFFQSTRSVGRQSTTRHRSPLKQRSLKQE 80

Query: 87  SCKYRDKVLVLGPAAYRDHKRVNVGLNKAMEFFYWLETHFSFAHTEMTCREMACVLARGN 146
           + K+ +K+L+LGPAAY+D KRV +G+ KAMEFFYW+ET+  F HTE TCREM  VLAR N
Sbjct: 81  THKHNNKLLILGPAAYKDPKRVKLGVFKAMEFFYWVETNCDFIHTESTCREMGFVLARAN 140

Query: 147 RLDKLWQFLKDMGRRENGVGVKLVTTNTITCLIKVLGEEGLVNQALALFYRMKQYHCKPD 206
           RLDKLW FL++M +RE   G KLVTTN +TCLIKVLGEEGLV +AL+LFYRMK+YHCKPD
Sbjct: 141 RLDKLWNFLQEMAKREVFDGRKLVTTNAVTCLIKVLGEEGLVKEALSLFYRMKKYHCKPD 200

Query: 207 VYAYNTIINAL 217
           VYAYNTII AL
Sbjct: 201 VYAYNTIIYAL 211


>29872.m000549 pentatricopeptide repeat-containing protein, putative
          Length = 642

 Score = 60.1 bits (144), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 69/137 (50%), Gaps = 19/137 (13%)

Query: 93  KVLVLGPAAYR---------DHK------RVNVGLNKAMEFFYWLETHFSFAHTEMTCRE 137
           K+   GP A +         DH+      +++V +N  ++FF W     +F H   +   
Sbjct: 73  KIFKWGPDAEKALEVLKLKVDHRLVHEVLKIDVEINVKIQFFKWAGKRRNFEHDSSSFMA 132

Query: 138 MACVLARGNRLDKLWQFLKDMGRRENGVGVKLVTTNTITCLIKVLGEEGLVNQALALFYR 197
           +   L       ++W+ ++DM R    V    +++  ++ ++K+LG+  +VN+AL++FY+
Sbjct: 133 LIHSLDEAGFYGEMWKTIQDMVRSSTCV----ISSVYLSEIVKLLGKAKMVNKALSVFYQ 188

Query: 198 MKQYHCKPDVYAYNTII 214
           +K   CKP    YN++I
Sbjct: 189 IKGRKCKPAATTYNSMI 205



 Score = 50.1 bits (118), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 5/76 (6%)

Query: 142 LARGNRLDKLWQFLKDMGRRENGVGVKLVTTNTITCLIKVLGEEGLVNQALALFYRMKQY 201
           L +  R+D  ++   DM +  +G    +V  N+   LI +LG+ G +   L LF +M+ +
Sbjct: 314 LGKAGRVDDAYRVFLDMIK--DGCKPDVVLINS---LINILGKVGRLEVTLKLFRKMESW 368

Query: 202 HCKPDVYAYNTIINAL 217
            CKP+V  YNT+I AL
Sbjct: 369 QCKPNVVTYNTVIKAL 384


>30055.m001579 pentatricopeptide repeat-containing protein, putative
          Length = 528

 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 5/111 (4%)

Query: 107 RVNVGLNKAMEFFYWLETHFSFAHTEMTCREMACVLARGNRLDKLWQFLKDMGRRENGVG 166
           R  +   +A+ FF W  +   F H      EM  +  +    D  WQ +  M  R   + 
Sbjct: 117 RHGIPFFQALSFFNWATSRPGFTHHPEPYNEMIDLAGKVRNFDLGWQVIDLMKARNVEIS 176

Query: 167 VKLVTTNTITCLIKVLGEEGLVNQALALFYRMKQYHCKPDVYAYNTIINAL 217
           ++     T + LI+     GL ++A+  F RM+ Y+CKPD  A++ +I+ L
Sbjct: 177 IE-----TFSILIRRYVRAGLASEAVHAFNRMEDYNCKPDKIAFSILISIL 222


>29825.m000330 pentatricopeptide repeat-containing protein, putative
          Length = 596

 Score = 53.5 bits (127), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 51/105 (48%), Gaps = 4/105 (3%)

Query: 113 NKAMEFFYWLETHFSFAHTEMTCREMACVLARGNRLDKLWQFLKDMGRRENGVGVKLVTT 172
           N    FF W      + H+    + M  + ++  +   +W  L++M R++N V   L+T+
Sbjct: 121 NLGYRFFVWASKQPGYRHSYENYKAMVKIFSKMRQFGAVWALLEEM-RKDNSV---LITS 176

Query: 173 NTITCLIKVLGEEGLVNQALALFYRMKQYHCKPDVYAYNTIINAL 217
                LI+      LV +A+ +   M +Y C+PD Y +  +++AL
Sbjct: 177 ELFIVLIRRFASARLVEKAIEVLDEMPKYGCEPDEYVFGCLLDAL 221


>30147.m014056 pentatricopeptide repeat-containing protein, putative
          Length = 876

 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 5/101 (4%)

Query: 115 AMEFFYWLETHFSFAHTEMTCREMACVLARGNRLDKLWQFLKDMGRRENGVGVKLVTTNT 174
           A+ FFYWL+    F H   T   M  +L R  +   + + L  M +  +G    +VT N 
Sbjct: 363 ALNFFYWLKRQPGFNHDGHTYTTMVGILGRAKQFGAINKLLDQMVK--DGCQPNVVTYNR 420

Query: 175 ITCLIKVLGEEGLVNQALALFYRMKQYHCKPDVYAYNTIIN 215
              LI   G    +N A+ +F  M++  C+PD   Y T+I+
Sbjct: 421 ---LIHSYGRANYLNDAVDVFNEMQRVGCEPDRVTYCTLID 458


>30006.m000285 pentatricopeptide repeat-containing protein, putative
          Length = 804

 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 52/100 (52%), Gaps = 6/100 (6%)

Query: 118 FFYWLETHFSFAHTEMTCREMACVLARGNRLDKLWQFLKDMGRRENGVGVKLVTTNTITC 177
           FF W  + F    + ++   +  +L + N  +  WQ LK++ R     G   ++ +  T 
Sbjct: 78  FFIW-ASKFRRLRSWVSHNMIIDMLIKDNGFELYWQVLKEIKR----CGFS-ISADAFTV 131

Query: 178 LIKVLGEEGLVNQALALFYRMKQYHCKPDVYAYNTIINAL 217
           LI+   +  ++ +A+  F  MK + CKPDV+ YNT+++ +
Sbjct: 132 LIQAYAKMDMIEKAVESFEMMKDFDCKPDVFTYNTVLHVM 171


>29680.m001750 pentatricopeptide repeat-containing protein, putative
          Length = 451

 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/104 (23%), Positives = 55/104 (52%), Gaps = 5/104 (4%)

Query: 114 KAMEFFYWLETHFSFAHTEMTCREMACVLARGNRLDKLWQFLKDMGRRENGVGVKLVTTN 173
           +++ FF W   +++   T +   E+  +LA+  R   +W+ +  M  +     +   ++ 
Sbjct: 86  ESLRFFNWSRAYYT--PTSIEYEELIKILAKSKRYSSMWKLITQMKDQNPQFSI---SSE 140

Query: 174 TITCLIKVLGEEGLVNQALALFYRMKQYHCKPDVYAYNTIINAL 217
           T+  +I+  G  GL++QA+ +F +    +C+ +V  YN+++ AL
Sbjct: 141 TVRSIIEEYGRSGLIDQAVEVFNQCNSLNCEQNVDIYNSLLFAL 184


>30174.m008794 pentatricopeptide repeat-containing protein, putative
          Length = 1163

 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 3/102 (2%)

Query: 113 NKAMEFFYWLETHFSFAHTEMTCREMACVLARGNRLDKLWQFLKDMGRRENGVGVKLVTT 172
           +KA++FF W      F H + +   M  +L R   L+    FL  + RR NG  VKL   
Sbjct: 100 SKALQFFNW-APELGFTHNDQSYFLMLEILGRARNLNVARNFLFSIKRRSNGT-VKL-ED 156

Query: 173 NTITCLIKVLGEEGLVNQALALFYRMKQYHCKPDVYAYNTII 214
                LI+  G+ GL  +++ +F  MK     P V  +N+++
Sbjct: 157 RFFNSLIRSYGKAGLFQESVQVFNSMKSVGVSPSVVTFNSLL 198