Jatropha Genome Database

JcCB0510081.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0510081.10 - phase: 0 
         (118 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29693.m002025 60S ribosomal protein L18a, putative                    231   5e-62
29989.m000434 60S ribosomal protein L18a, putative                    229   3e-61

>29693.m002025 60S ribosomal protein L18a, putative
          Length = 303

 Score =  231 bits (589), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 111/115 (96%), Positives = 113/115 (98%)

Query: 4   NLIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCI 63
           N IFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCI
Sbjct: 189 NEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCI 248

Query: 64  QIIKTGTIPAKLCKRESSKQFHNSKIKFPLVFKKVRPPTRKLRTTYKASRPNLFM 118
           QIIKT TIPAKLCKRES+KQFHNSKIKFPLVFKKVRPPTRKL+TTYKASRPNLFM
Sbjct: 249 QIIKTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 303


>29989.m000434 60S ribosomal protein L18a, putative
          Length = 178

 Score =  229 bits (583), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 108/115 (93%), Positives = 112/115 (97%)

Query: 4   NLIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCI 63
           N IFEK+PTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRF CI
Sbjct: 64  NEIFEKSPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFSCI 123

Query: 64  QIIKTGTIPAKLCKRESSKQFHNSKIKFPLVFKKVRPPTRKLRTTYKASRPNLFM 118
           QIIKT TIPAKLCKRES+KQFHNSKIKFPLVFKKVRPP+RKL+TTYKASRPNLFM
Sbjct: 124 QIIKTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPSRKLKTTYKASRPNLFM 178