Jatropha Genome Database

JcCB0508071.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0508071.10 + phase: 0 /partial
         (136 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30138.m004035 conserved hypothetical protein                           56   4e-09
29848.m004543 DNA binding protein, putative                            54   3e-08
29696.m000106 actin binding protein, putative                          51   2e-07

>30138.m004035 conserved hypothetical protein
          Length = 1550

 Score = 56.2 bits (134), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 22/33 (66%), Positives = 27/33 (81%)

Query: 58   TGNAPRKTSLKPLHWVKVTRAVQGSLWADSQKQ 90
            T  APR++SLKPLHW KVTRA+QGSLW + Q+ 
Sbjct: 1138 TATAPRRSSLKPLHWSKVTRAIQGSLWEELQRH 1170


>29848.m004543 DNA binding protein, putative
          Length = 1266

 Score = 53.5 bits (127), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 21/33 (63%), Positives = 28/33 (84%)

Query: 62  PRKTSLKPLHWVKVTRAVQGSLWADSQKQENLS 94
           PRK +LKP HW+K+TRA+QGSLWA++QK +  S
Sbjct: 846 PRKANLKPYHWLKITRAMQGSLWAEAQKSDEAS 878


>29696.m000106 actin binding protein, putative
          Length = 1191

 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 21/28 (75%), Positives = 25/28 (89%)

Query: 67  LKPLHWVKVTRAVQGSLWADSQKQENLS 94
           LKPLHW+K+TRAVQGSLWA++QK E  S
Sbjct: 782 LKPLHWLKLTRAVQGSLWAEAQKSEEAS 809