Jatropha Genome Database

JcCB0507301.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0507301.10 - phase: 0 /partial
         (221 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29613.m000358 omega-6 desaturase, endoplasmic reticulum               412   e-116
28035.m000362 oleate 12-hydroxylase                                   328   1e-90
28176.m000273 Omega-3 fatty acid desaturase, chloroplast precurs...   124   5e-29
29814.m000719 Omega-3 fatty acid desaturase, chloroplast precursor    122   1e-28
29681.m001360 Omega-3 fatty acid desaturase, endoplasmic reticul...   119   8e-28
29696.m000105 Omega-6 fatty acid desaturase, chloroplast precurs...    65   2e-11

>29613.m000358 omega-6 desaturase, endoplasmic reticulum
          Length = 383

 Score =  412 bits (1060), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 190/221 (85%), Positives = 209/221 (94%)

Query: 1   MGAGGRMSVPPSPKKLEAEVLKRVPYSKPPFTLGQVKKAIPPHCFQRSVLRSFSYVVYDL 60
           MGAGGRMSVPP  KK+E++ LKR P SKPPFTLGQ+KKAIPPHCF+RS+ RSFSYVVYDL
Sbjct: 1   MGAGGRMSVPPPSKKVESDDLKRAPSSKPPFTLGQIKKAIPPHCFKRSIPRSFSYVVYDL 60

Query: 61  TLAFIFYYVATNYFHLLPQPLSYVAWPIYWSLQGCVLTGIWVIAHECGHHAFSDYQWLDD 120
           T+AF+FYYVATNYFHLLP+PLSYVAWPIYW+LQGCVLTG+WVIAHECGHHAFSDYQ LDD
Sbjct: 61  TIAFLFYYVATNYFHLLPEPLSYVAWPIYWALQGCVLTGVWVIAHECGHHAFSDYQLLDD 120

Query: 121 IVGLLLHSCLLVPYFSWKHSHRRHHSNTGSLERDEVFVPKKKSNIRWFSKYLNNLPGRLF 180
           +VGL+LHSCLLVPYFSWKHSHRRHHSNTGSLERDEVFVPKKKS+IRW+SKYLNN PGR+ 
Sbjct: 121 VVGLILHSCLLVPYFSWKHSHRRHHSNTGSLERDEVFVPKKKSSIRWYSKYLNNPPGRIM 180

Query: 181 TLTITLALGWPLYLAFNVSGRHYDRFACHFDPYGPIYNDRE 221
           T+ +TL LGWPLYLAFNVSGR YDRFACH+DPYGPIYNDRE
Sbjct: 181 TIAVTLTLGWPLYLAFNVSGRPYDRFACHYDPYGPIYNDRE 221


>28035.m000362 oleate 12-hydroxylase
          Length = 387

 Score =  328 bits (842), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 159/225 (70%), Positives = 185/225 (82%), Gaps = 4/225 (1%)

Query: 1   MGAGGRMSV----PPSPKKLEAEVLKRVPYSKPPFTLGQVKKAIPPHCFQRSVLRSFSYV 56
           MG GGRMS       S KK  +  LKR P++KPPFTLG +K+AIPPHCF+RS +RSFSYV
Sbjct: 1   MGGGGRMSTVITSNNSEKKGGSSHLKRAPHTKPPFTLGDLKRAIPPHCFERSFVRSFSYV 60

Query: 57  VYDLTLAFIFYYVATNYFHLLPQPLSYVAWPIYWSLQGCVLTGIWVIAHECGHHAFSDYQ 116
            YD+ L+F+FY +ATN+F  +  PLSYVAW +YW  QGC+LTG+WVI HECGHHAFS+YQ
Sbjct: 61  AYDVCLSFLFYSIATNFFPYISSPLSYVAWLVYWLFQGCILTGLWVIGHECGHHAFSEYQ 120

Query: 117 WLDDIVGLLLHSCLLVPYFSWKHSHRRHHSNTGSLERDEVFVPKKKSNIRWFSKYLNNLP 176
             DDIVGL++HS LLVPYFSWK+SHRRHHSN GSLERDEVFVPK KS I W+SKYLNN P
Sbjct: 121 LADDIVGLIVHSALLVPYFSWKYSHRRHHSNIGSLERDEVFVPKSKSKISWYSKYLNNPP 180

Query: 177 GRLFTLTITLALGWPLYLAFNVSGRHYDRFACHFDPYGPIYNDRE 221
           GR+ TL  TL LGWPLYLAFNVSGR YDRFACH+DPYGPI+++RE
Sbjct: 181 GRVLTLAATLLLGWPLYLAFNVSGRPYDRFACHYDPYGPIFSERE 225


>28176.m000273 Omega-3 fatty acid desaturase, chloroplast precursor,
           putative
          Length = 452

 Score =  124 bits (310), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 75/209 (35%), Positives = 109/209 (52%), Gaps = 21/209 (10%)

Query: 16  LEAEVLKRVPYSKPPFTLGQVKKAIPPHCFQRSVLRSFSYVVYDLTLAFIFYYVATNYFH 75
           +E E  +  P + PPF L  ++ AIP HC+ ++  RS SYVV D+ + F     A  Y +
Sbjct: 90  IEKEEAEFDPGAPPPFKLSDIRAAIPKHCWIKNSWRSMSYVVRDVAVVFGLAAAAA-YLN 148

Query: 76  LLPQPLSYVAWPIYWSLQGCVLTGIWVIAHECGHHAFSDYQWLDDIVGLLLHSCLLVPYF 135
                 ++V WP+YW+ QG +   ++V+ H+CGH +FS+   L+ +VG LLHS +LVPY 
Sbjct: 149 ------NWVVWPLYWAAQGTMFWALFVLGHDCGHGSFSNNNKLNSVVGHLLHSSILVPYH 202

Query: 136 SWKHSHRRHHSNTGSLERDEVFVPKKKSNIRWFSKYLNNLPGRLFTLTITL---ALGWPL 192
            W+ SHR HH N G +E DE + P  +       K   NL G   TL  +L    L +P 
Sbjct: 203 GWRISHRTHHQNHGHVENDESWHPLSE-------KIFRNLDGITRTLRFSLPFPMLAYPF 255

Query: 193 YLAFNVSGRHYDRFACHFDPYGPIYNDRE 221
           YL     G    +   HF P   ++   E
Sbjct: 256 YLWSRSPG----KTGSHFHPDSDLFVKNE 280


>29814.m000719 Omega-3 fatty acid desaturase, chloroplast precursor
          Length = 460

 Score =  122 bits (306), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 74/194 (38%), Positives = 109/194 (56%), Gaps = 17/194 (8%)

Query: 29  PPFTLGQVKKAIPPHCFQRSVLRSFSYVVYDLTLAFIFYYVATNYFHLLPQPLSYVAWPI 88
           PPFTL  ++ AIP HC+ ++  RS SYV+ D+ + F    VA  YF+      ++VAWP+
Sbjct: 108 PPFTLADIRAAIPKHCWVKNPWRSMSYVLRDVVVVFGLAAVAA-YFN------NWVAWPL 160

Query: 89  YWSLQGCVLTGIWVIAHECGHHAFSDYQWLDDIVGLLLHSCLLVPYFSWKHSHRRHHSNT 148
           YW  QG +   ++V+ H+CGH +FS+   L+ +VG LLHS +LVPY  W+ SHR HH N 
Sbjct: 161 YWFCQGTMFWALFVLGHDCGHGSFSNNPKLNSVVGHLLHSSILVPYHGWRISHRTHHQNH 220

Query: 149 GSLERDEVFVPKKKSNIRWFSKYLNNLPGRL-FTLTITLALGWPLYLAFNVSGRHYDRFA 207
           G +E DE + P  +       K L+N+   L F+L   + L +P YL     G+      
Sbjct: 221 GHVENDESWHPLSEK----IFKSLDNVTKTLRFSLPFPM-LAYPFYLWSRSPGKK----G 271

Query: 208 CHFDPYGPIYNDRE 221
            HF P   ++  +E
Sbjct: 272 SHFHPDSGLFVPKE 285


>29681.m001360 Omega-3 fatty acid desaturase, endoplasmic reticulum,
           putative
          Length = 506

 Score =  119 bits (299), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 71/200 (35%), Positives = 107/200 (53%), Gaps = 21/200 (10%)

Query: 25  PYSKPPFTLGQVKKAIPPHCFQRSVLRSFSYVVYDLTLAFIFYYVATNYFHLLPQPLSYV 84
           P   PPF + +++ AIP HC+ ++  RS SYV+ D  +       A           S+ 
Sbjct: 80  PSDPPPFKIAEIRAAIPKHCWIKNPWRSLSYVLRDAFVVLALAAAALFLD-------SWC 132

Query: 85  AWPIYWSLQGCVLTGIWVIAHECGHHAFSDYQWLDDIVGLLLHSCLLVPYFSWKHSHRRH 144
            WP+YW+ QG +   I+V+ H+CGH +FSD   L+++VG LLHS +LVPY  W+ SHR H
Sbjct: 133 FWPLYWAAQGTMFWAIFVLGHDCGHGSFSDSTLLNNVVGHLLHSSILVPYHGWRISHRTH 192

Query: 145 HSNTGSLERDEVFVPKKKSNIRWFSKYLNNL--PGRLFTLTITL-ALGWPLYLAFNVSGR 201
           H N G++++DE +VP  +       K  N+L    R+   T+ L  L +P+YL     G+
Sbjct: 193 HQNHGNVDKDESWVPLPE-------KIYNSLDVSTRIMRFTVPLPLLAYPIYLWTRGPGK 245

Query: 202 HYDRFACHFDPYGPIYNDRE 221
                  HF PY  ++   E
Sbjct: 246 D----GSHFSPYSDLFAPNE 261


>29696.m000105 Omega-6 fatty acid desaturase, chloroplast precursor,
           putative
          Length = 440

 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 69/150 (46%), Gaps = 14/150 (9%)

Query: 32  TLGQVKKAIPPHCFQRSVLRSFSYVVYDL-TLAFIFYYVATNYFHLLPQPLSYVAWPIYW 90
           TL  +   +P   F+   ++++  V+  + + A   + ++   ++LLP         + W
Sbjct: 103 TLKYIIDTLPKKVFEIDDVKAWKTVLISVASYALGLFMISKAPWYLLP---------LAW 153

Query: 91  SLQGCVLTGIWVIAHECGHHAFSDYQWLDDIVGLLLHSCLLVPYFSWKHSHRRHHSNTGS 150
           +  G  +TG +VI H+C H +FS  + ++DIVG L    L+ PY  W+  H RHH+ T  
Sbjct: 154 AWTGTAITGFFVIGHDCAHKSFSKNKLVEDIVGTLAFMPLIYPYEPWRFKHDRHHAKTNM 213

Query: 151 LERDE----VFVPKKKSNIRWFSKYLNNLP 176
             R         P       W S  + N+P
Sbjct: 214 CVRHSFSLYFLCPNPNCATSWESPSILNMP 243