Jatropha Genome Database

JcCB0506361.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0506361.10 + phase: 0 /pseudo/partial
         (235 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29648.m002007 8-oxoguanine DNA glycosylase, putative                  262   1e-70

>29648.m002007 8-oxoguanine DNA glycosylase, putative
          Length = 412

 Score =  262 bits (669), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 125/147 (85%), Positives = 133/147 (90%)

Query: 6   RAKYITGTVDALQSKPGGGAEWLSSLRKSDLQVVVDALCTLPGVGPKVASCIALFSLDQH 65
           RAKYITGT+DALQ KPGGG EWL++LRK DLQVV+DALCTLPGVGPKVA+CIALFSLDQH
Sbjct: 224 RAKYITGTIDALQLKPGGGVEWLTALRKLDLQVVIDALCTLPGVGPKVAACIALFSLDQH 283

Query: 66  HAIPVDTHVWQIATRYLLPELAAVRLTPKLCSRVADAFVSKYGKYAGWAQTLLFIAELPS 125
           HAIPVDTHVWQIATR+LLPELA  RLTPKLCSRVADAFVSKYGKYAGWAQTLLFIAELP 
Sbjct: 284 HAIPVDTHVWQIATRHLLPELAGARLTPKLCSRVADAFVSKYGKYAGWAQTLLFIAELPP 343

Query: 126 QKTLLPSHFWTINEKKSATKKGCXVDS 152
           QK+LLPS FWT+ E KSA KK    DS
Sbjct: 344 QKSLLPSSFWTVKEIKSANKKDSEADS 370