Jatropha Genome Database

JcCB0504061.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0504061.20 + phase: 1 /pseudo/partial
         (72 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30174.m008801 malate dehydrogenase, putative                           59   4e-10
29200.m000165 malate dehydrogenase, putative                           59   5e-10
29200.m000164 malate dehydrogenase, putative                           57   3e-09

>30174.m008801 malate dehydrogenase, putative
          Length = 332

 Score = 59.3 bits (142), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 25/33 (75%), Positives = 31/33 (93%)

Query: 22 PMVARGIMLGLDQPVILHMLDIESAAKALEGVK 54
          PM+ARG+MLG DQPVILH+LDIE A++AL+GVK
Sbjct: 23 PMIARGVMLGPDQPVILHLLDIEPASEALKGVK 55


>29200.m000165 malate dehydrogenase, putative
          Length = 332

 Score = 58.9 bits (141), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 26/33 (78%), Positives = 29/33 (87%)

Query: 22 PMVARGIMLGLDQPVILHMLDIESAAKALEGVK 54
          PM+ARG+MLG DQPVILHMLDI  AA+AL GVK
Sbjct: 23 PMIARGVMLGPDQPVILHMLDIPPAAEALNGVK 55


>29200.m000164 malate dehydrogenase, putative
          Length = 266

 Score = 56.6 bits (135), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/33 (75%), Positives = 28/33 (84%)

Query: 22 PMVARGIMLGLDQPVILHMLDIESAAKALEGVK 54
          PM+ARG+MLG DQPVILHMLDI  A +AL GVK
Sbjct: 23 PMIARGMMLGPDQPVILHMLDIPPAVEALNGVK 55