Jatropha Genome Database

JcCB0504061.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0504061.10 + phase: 1 /partial
         (83 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30174.m008801 malate dehydrogenase, putative                          172   3e-44
29200.m000165 malate dehydrogenase, putative                          142   5e-35
29200.m000164 malate dehydrogenase, putative                          140   2e-34
28872.m000247 malate dehydrogenase, putative                           50   2e-07

>30174.m008801 malate dehydrogenase, putative
          Length = 332

 Score =  172 bits (436), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 79/81 (97%), Positives = 79/81 (97%)

Query: 3   CDHIRDWVPGTPKGTWVSMGVYSDGSYGIQPGLIYSFPVTCEKGNWSIVQGLKIDEFSRA 62
           CDHIRDWV GTPKGTWVSMGVYSDGSYGIQPGLIYSFPVTCEKGNWSIVQGLKIDEFSRA
Sbjct: 252 CDHIRDWVLGTPKGTWVSMGVYSDGSYGIQPGLIYSFPVTCEKGNWSIVQGLKIDEFSRA 311

Query: 63  KMDATAKELTEEKSLAYSCLN 83
           KMDATAKEL EEKSLAYSCLN
Sbjct: 312 KMDATAKELIEEKSLAYSCLN 332


>29200.m000165 malate dehydrogenase, putative
          Length = 332

 Score =  142 bits (357), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 62/81 (76%), Positives = 72/81 (88%)

Query: 3   CDHIRDWVPGTPKGTWVSMGVYSDGSYGIQPGLIYSFPVTCEKGNWSIVQGLKIDEFSRA 62
           CDHIR+WV GTP+GTWVSMGVYSDGSY +  GLIYSFPVTC+ G W IVQGL IDEFSR 
Sbjct: 252 CDHIRNWVLGTPEGTWVSMGVYSDGSYNVPSGLIYSFPVTCQNGEWKIVQGLSIDEFSRK 311

Query: 63  KMDATAKELTEEKSLAYSCLN 83
           K+D+TA+EL+EEK+LAYSCL+
Sbjct: 312 KLDSTAEELSEEKALAYSCLS 332


>29200.m000164 malate dehydrogenase, putative
          Length = 266

 Score =  140 bits (352), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 62/81 (76%), Positives = 71/81 (87%)

Query: 3   CDHIRDWVPGTPKGTWVSMGVYSDGSYGIQPGLIYSFPVTCEKGNWSIVQGLKIDEFSRA 62
           CDHIRDWV GTP+GTWVSMGVYSDGSY I  GLIY+FPVTC+ G W IVQGL ID+FSR 
Sbjct: 186 CDHIRDWVLGTPEGTWVSMGVYSDGSYDIPAGLIYAFPVTCQNGEWKIVQGLHIDDFSRK 245

Query: 63  KMDATAKELTEEKSLAYSCLN 83
           K+D TA+EL+EEK+LAYSCL+
Sbjct: 246 KLDLTAEELSEEKALAYSCLS 266


>28872.m000247 malate dehydrogenase, putative
          Length = 433

 Score = 50.1 bits (118), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 2/74 (2%)

Query: 4   DHIRDWVPGTPKGTWVSMGVYSDGS-YGIQPGLIYSFPVTCE-KGNWSIVQGLKIDEFSR 61
           D I+  V  TP+G W S GVY++G+ YGI   L++S P      G++ +V+ +  D++  
Sbjct: 334 DAIKSLVTPTPEGDWFSSGVYTNGNPYGIAEDLVFSMPCRSNGDGDYELVKDVIFDDYLL 393

Query: 62  AKMDATAKELTEEK 75
            K+  T  EL  EK
Sbjct: 394 KKITKTEAELLAEK 407