Jatropha Genome Database

JcCB0499871.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0499871.10 - phase: 0 
         (277 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29711.m000322 DNA binding protein, putative                           322   8e-89
29830.m001386 DNA binding protein, putative                           211   3e-55
30147.m014112 DNA binding protein, putative                            62   3e-10
28166.m001054 DNA binding protein, putative                            55   5e-08
29842.m003681 DNA binding protein, putative                            55   5e-08
29603.m000513 DNA binding protein, putative                            50   1e-06

>29711.m000322 DNA binding protein, putative
          Length = 316

 Score =  322 bits (826), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 161/205 (78%), Positives = 170/205 (82%)

Query: 22  DPDRPKNDKATILADTIQLLKDLTSQVNKLKAEYTTLTEESRELTQEKNDLREEKASLKS 81
           DPD+PKNDKATIL DTIQLLKDLTSQVNKLK EY TLTEESRELTQEKNDLREEKASLKS
Sbjct: 62  DPDKPKNDKATILTDTIQLLKDLTSQVNKLKVEYATLTEESRELTQEKNDLREEKASLKS 121

Query: 82  DIENLNIQYQQRLRSTYPWVAMDHSVVMAPTSYXXXXXXXXXXXXXXXXXSMQPYPFFGN 141
           +IENLNIQYQQR R+TYPWVAMDHSVVMAPTSY                 +MQPYPFFGN
Sbjct: 122 EIENLNIQYQQRARATYPWVAMDHSVVMAPTSYPFLMPMPIPPRPISLHPTMQPYPFFGN 181

Query: 142 QNPAVIHNPCSTFVPYVTPNTLVDQQSTQRASSFAQPASGSHVSGKQDSKIKLSGESKVG 201
           QNP VIHNP S FVPY+TP+ LV+QQSTQ A+S A PASGSHVSGK+DSK K S ESK G
Sbjct: 182 QNPTVIHNPYSIFVPYMTPSALVEQQSTQHATSSALPASGSHVSGKEDSKNKSSRESKTG 241

Query: 202 KSLDSNDVTTELELKTPGSMTDQDL 226
           KS DSNDVTTELELKTPGS TD DL
Sbjct: 242 KSWDSNDVTTELELKTPGSTTDPDL 266


>29830.m001386 DNA binding protein, putative
          Length = 317

 Score =  211 bits (537), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 114/208 (54%), Positives = 137/208 (65%), Gaps = 12/208 (5%)

Query: 22  DPDRPKNDKATILADTIQLLKDLTSQVNKLKAEYTTLTEESRELTQEKNDLREEKASLKS 81
           DPDRPKNDKATIL DTIQ+LKDLT++V++LKAEY TL+EESREL QEKN+LREEKASLKS
Sbjct: 69  DPDRPKNDKATILTDTIQMLKDLTAEVSRLKAEYATLSEESRELMQEKNELREEKASLKS 128

Query: 82  DIENLNIQYQQRLRSTYPWVAMDHSVVMAPTSYXXXXXXXXXXXXXXXXXSMQPYPFFGN 141
           DIENL++QYQQR+R  +PW ++D SVV+ PT Y                 S+ P+PFFGN
Sbjct: 129 DIENLSVQYQQRVRVMFPWASVDPSVVVGPT-YSYPVPLPVPPGPIPMHPSLHPFPFFGN 187

Query: 142 QNPAVIHNPCSTFVPYVTP-NTLVDQQSTQRASSFAQPASGSHVSGKQDSKIKLSGE--- 197
           QNP  I  PCSTF+PY  P N   +  S   AS+       S+   K DSK K +     
Sbjct: 188 QNPGAIPGPCSTFIPYPAPANPPTEHASLPYAST-------SNTLSKHDSKSKSADHPRS 240

Query: 198 SKVGKSLDSNDVTTELELKTPGSMTDQD 225
           S   +  DSNDV TEL+L  PGS   QD
Sbjct: 241 SSAERCDDSNDVATELQLTMPGSSAQQD 268


>30147.m014112 DNA binding protein, putative
          Length = 314

 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/78 (42%), Positives = 49/78 (62%)

Query: 22  DPDRPKNDKATILADTIQLLKDLTSQVNKLKAEYTTLTEESRELTQEKNDLREEKASLKS 81
           D  +P N KA+IL +  +LLKDL  Q+  LK E  +L  ESR +T EKN+LREE  +L++
Sbjct: 150 DLTQPNNGKASILCEAARLLKDLFGQIECLKKENESLLSESRYVTVEKNELREENLALET 209

Query: 82  DIENLNIQYQQRLRSTYP 99
            IE+L  + + +   + P
Sbjct: 210 QIESLQGELEAKAVQSKP 227


>28166.m001054 DNA binding protein, putative
          Length = 235

 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 1/71 (1%)

Query: 22  DPDRP-KNDKATILADTIQLLKDLTSQVNKLKAEYTTLTEESRELTQEKNDLREEKASLK 80
           +P RP K DKA IL D ++++  L  +  KLK   ++L E+ +EL  EKN+LR+EK  LK
Sbjct: 102 EPGRPPKTDKAAILIDAVRMVTQLRGEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLK 161

Query: 81  SDIENLNIQYQ 91
            + E L  Q +
Sbjct: 162 VEKEKLEQQLK 172


>29842.m003681 DNA binding protein, putative
          Length = 229

 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 44/69 (63%), Gaps = 1/69 (1%)

Query: 22  DPDRP-KNDKATILADTIQLLKDLTSQVNKLKAEYTTLTEESRELTQEKNDLREEKASLK 80
           DP RP K DK+ ILAD ++++  L ++  KLK     L E+  EL  EKN+LR+EK  LK
Sbjct: 96  DPGRPPKMDKSVILADAMKMVNQLRAEAQKLKESNENLQEKVNELKVEKNELRDEKQRLK 155

Query: 81  SDIENLNIQ 89
           ++ E++  Q
Sbjct: 156 TEKESIERQ 164


>29603.m000513 DNA binding protein, putative
          Length = 219

 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 1/71 (1%)

Query: 22  DPDRP-KNDKATILADTIQLLKDLTSQVNKLKAEYTTLTEESRELTQEKNDLREEKASLK 80
           +P+RP + DK ++L D I++L  L ++  +LK     L EE + L  EKN+LREEK +LK
Sbjct: 93  EPERPARTDKPSLLDDAIRVLNQLKTEAQELKETNEKLLEEIKCLKAEKNELREEKLTLK 152

Query: 81  SDIENLNIQYQ 91
           +D E    Q +
Sbjct: 153 ADKERTEQQLK 163