Jatropha Genome Database

JcCB0496561.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0496561.10 + phase: 2 /partial
         (104 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29603.m000509 Ethylene-responsive transcription factor, putative       47   2e-06

>29603.m000509 Ethylene-responsive transcription factor, putative
          Length = 151

 Score = 47.0 bits (110), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/38 (55%), Positives = 24/38 (63%)

Query: 1  GTFDTXXXXXXXXXXXXFSMRGHLAILNFPNEYYSRVI 38
          GTFDT            F +RGHLA LNFPNEYYS+V+
Sbjct: 43 GTFDTAEEAARAYDRAAFHLRGHLATLNFPNEYYSQVM 80