Jatropha Genome Database

JcCB0492781.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0492781.10 - phase: 0 /partial
         (200 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

27942.m000154 conserved hypothetical protein                          350   3e-97

>27942.m000154 conserved hypothetical protein
          Length = 436

 Score =  350 bits (898), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 175/197 (88%), Positives = 186/197 (94%)

Query: 1   MQVMVKGSQGHAGTVPMSLRQDPMAAAAELIVLLESLCKHPKDFLSYDGYCNDSIVESLS 60
           ++V VKGSQGHAGTVPMSLRQDPMAAAAELIVLLESLCK+PKDFLSYD  CN S +ESLS
Sbjct: 218 LKVTVKGSQGHAGTVPMSLRQDPMAAAAELIVLLESLCKYPKDFLSYDSQCNGSTLESLS 277

Query: 61  SSLVCTVGEISTWPSASNVIPGQVTFTVDLRAMDDMGREAVLYELSNQIYHICDRRSVSC 120
           SSLVCTVGEISTWPSASNVIPGQVTFTVDLRAMDDMGR+AVLYELSN+IY ICDRRSVSC
Sbjct: 278 SSLVCTVGEISTWPSASNVIPGQVTFTVDLRAMDDMGRDAVLYELSNRIYQICDRRSVSC 337

Query: 121 IIERKHDAKAVICDSELSLQLKSAANAALKRMTGEIQDEVPVLMSGAGHDAMAMSHLTKV 180
           IIERKHDA+AV CD ELS QLK AANAALKRMTGEIQD++P LMSGAGHDAMAMSHLTKV
Sbjct: 338 IIERKHDAQAVSCDPELSSQLKLAANAALKRMTGEIQDDIPTLMSGAGHDAMAMSHLTKV 397

Query: 181 GMLFVRCRGGVSHSPAD 197
           GMLFVRCRGG+SHSPA+
Sbjct: 398 GMLFVRCRGGISHSPAE 414