Jatropha Genome Database

JcCB0492761.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0492761.10 + phase: 0 
         (322 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30128.m008626 DNA-damage-repair/toleration protein DRT102, putative   513   e-146

>30128.m008626 DNA-damage-repair/toleration protein DRT102, putative
          Length = 318

 Score =  513 bits (1320), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 246/314 (78%), Positives = 275/314 (87%), Gaps = 7/314 (2%)

Query: 12  RPLKVITGADAYGCTLKDALVSHLRSLNIDVEDLGTSSYYSIAAEVGRRVSAANXXXXXX 71
           +PLK+ITGAD+ GC+LKDAL+SHLRSLNIDVEDLGTSSYY+I AEVGRRVSAAN      
Sbjct: 7   QPLKIITGADSLGCSLKDALISHLRSLNIDVEDLGTSSYYTIGAEVGRRVSAANSTSPSP 66

Query: 72  XXXEIRGLVACGTGVGVSIFANKFPGVFANTCLSTADAINTRSINNCNVLAVSGLATTPE 131
              EIRGLVACGTG GVSIFANKFPGV+A+TCLST DA NTRSINNCNVLAVSGL TTPE
Sbjct: 67  ---EIRGLVACGTGAGVSIFANKFPGVYASTCLSTGDAANTRSINNCNVLAVSGLFTTPE 123

Query: 132 SGIEILDAWLNTPFKAPCPAFGSTPYNEEISSFLDNSLVEMPKIGQE----DKKEETSTL 187
           S I+ILD WL+TPFKAPCPA  + P++ EIS FLDNSL+EMP+IGQ+     K+EE  TL
Sbjct: 124 SAIQILDTWLSTPFKAPCPASNNAPWSSEISEFLDNSLLEMPEIGQKVDTNIKEEEKETL 183

Query: 188 NPCALCCLVKNRKLDPIDIIPGGSMKIVRESPTSAFVSFKAGSVEPAHHHTFGHDLVVIK 247
           + C+LCCL KNRKLD ID+IPGGSMKI+RESPTSA V FKAGS+EPAHHHTFGHD+VV+K
Sbjct: 184 STCSLCCLAKNRKLDEIDLIPGGSMKILRESPTSAIVRFKAGSIEPAHHHTFGHDIVVMK 243

Query: 248 GSKRVWNLSKKTKYDLVVGDYLFTPAGDVHRVKYFEDTEFFIKWEGQWDIFFDEDLEVAK 307
           GSK VWNLSKK KYDL VGDYLFTPAGDVHRVKYFEDTEFFIKWEG+WD+FFDEDLEVAK
Sbjct: 244 GSKSVWNLSKKVKYDLGVGDYLFTPAGDVHRVKYFEDTEFFIKWEGKWDLFFDEDLEVAK 303

Query: 308 SAIEKEAEDGFQWI 321
           + IEKEA+DGFQ +
Sbjct: 304 TEIEKEADDGFQRV 317