Jatropha Genome Database

JcCB0489751.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0489751.10 + phase: 2 /partial
         (261 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29696.m000106 actin binding protein, putative                         147   7e-36
29848.m004543 DNA binding protein, putative                            99   2e-21
30138.m004035 conserved hypothetical protein                           80   1e-15

>29696.m000106 actin binding protein, putative
          Length = 1191

 Score =  147 bits (370), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 78/121 (64%), Positives = 86/121 (71%)

Query: 141 KGTSKMGNNVDNNSQXXXXXXXXXXXXXXXXXXXKGRLSRTISSRSNQTKKLKPLHWLKL 200
           KG SKMG+N D N                     KGRLSRTISSRS QTKKLKPLHWLKL
Sbjct: 731 KGLSKMGSNEDYNLSQSPSPAPPTPAPPLSSSSIKGRLSRTISSRSQQTKKLKPLHWLKL 790

Query: 201 TRAVQGSLWAEAQKSGEASKAPEIDLSELENLFSASVPNSDHGRKSRIHSSRGRKAEKVQ 260
           TRAVQGSLWAEAQKS EASKAPEID+SELENLFSAS+ N+D+ +KS +    G K +KVQ
Sbjct: 791 TRAVQGSLWAEAQKSEEASKAPEIDMSELENLFSASISNADNKKKSIVRGLPGPKIDKVQ 850

Query: 261 L 261
           L
Sbjct: 851 L 851


>29848.m004543 DNA binding protein, putative
          Length = 1266

 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 56/92 (60%), Positives = 66/92 (71%), Gaps = 5/92 (5%)

Query: 175 KGR-LSRTISSRSNQTKK--LKPLHWLKLTRAVQGSLWAEAQKSGEASKAPEIDLSELEN 231
           KGR LSR+      Q +K  LKP HWLK+TRA+QGSLWAEAQKS EASK PE D+SELE+
Sbjct: 831 KGRGLSRSSPRNQAQPRKANLKPYHWLKITRAMQGSLWAEAQKSDEASKTPEFDMSELES 890

Query: 232 LFSASVPNSDHGRKSRIHSSR--GRKAEKVQL 261
           LFSA+ PN+ HG      S R  G K++KVQL
Sbjct: 891 LFSAAAPNTGHGSTGEKSSRRTLGSKSDKVQL 922


>30138.m004035 conserved hypothetical protein
          Length = 1550

 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 40/71 (56%), Positives = 49/71 (69%), Gaps = 1/71 (1%)

Query: 192  LKPLHWLKLTRAVQGSLWAEAQKSGEASKAPEIDLSELENLFSASVPN-SDHGRKSRIHS 250
            LKPLHW K+TRA+QGSLW E Q+  E   APE D+SELE+LFSA+VP  +D G+      
Sbjct: 1147 LKPLHWSKVTRAIQGSLWEELQRHAEPQIAPEFDVSELESLFSATVPKAADSGKAGGRRK 1206

Query: 251  SRGRKAEKVQL 261
            S G K +KV L
Sbjct: 1207 SVGSKTDKVHL 1217