Jatropha Genome Database

JcCB0488391.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0488391.10 - phase: 0 /partial
         (111 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30147.m013992 structural constituent of ribosome, putative            155   3e-39

>30147.m013992 structural constituent of ribosome, putative
          Length = 163

 Score =  155 bits (392), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 79/108 (73%), Positives = 82/108 (75%), Gaps = 3/108 (2%)

Query: 1   MFMTRFIGRTLFXXXXXXXXXXXXXTIQFAR---NPLEEFFEADRSQDEDNKIFYGRSWK 57
           MF+TRFIGRTLF                  R   NPLEEFFEADRSQDE   + YGRSWK
Sbjct: 1   MFLTRFIGRTLFAAAKSETPAAAAAATATTRTPLNPLEEFFEADRSQDEAKPVVYGRSWK 60

Query: 58  ASELRLKSWDDLQKLWYVMLKEKNMLMTQRQMLHAQNLRFPNPERLPK 105
           ASELRLKSWDDL KLWYV+LKEKNMLMTQRQMLHAQNLRFPNPERLPK
Sbjct: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRFPNPERLPK 108