Jatropha Genome Database

JcCB0480341.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0480341.10 - phase: 0 /partial
         (96 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30131.m007139 arginine decarboxylase, putative                        112   3e-26

>30131.m007139 arginine decarboxylase, putative
          Length = 724

 Score =  112 bits (281), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 59/98 (60%), Positives = 72/98 (73%), Gaps = 9/98 (9%)

Query: 1  MPALACCVDAALAPPGYANHAGDSS--LQSSILFSGVXXXXXXXXXXXIDNSPFSHWSPS 58
          M +LACCVD+ALAPPGYA++ GD++    S + FSGV              +  ++WSPS
Sbjct: 1  MSSLACCVDSALAPPGYASNPGDNTSFFPSPVAFSGVPPAPPP-------TTTTTNWSPS 53

Query: 59 LSAALYKIDGWGAPYFSVNSSGNIAVHPYGTDTLAHQE 96
          LSAALYK+DGWGAPYFSVNSSGNI+VHPYG +TL HQE
Sbjct: 54 LSAALYKLDGWGAPYFSVNSSGNISVHPYGAETLPHQE 91