Jatropha Genome Database

JcCB0477181.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0477181.10 + phase: 0 /partial
         (126 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29929.m004707 conserved hypothetical protein                          230   1e-61
29692.m000519 conserved hypothetical protein                           79   4e-16

>29929.m004707 conserved hypothetical protein
          Length = 483

 Score =  230 bits (587), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 107/126 (84%), Positives = 118/126 (93%)

Query: 1   NEKITDDILLQLTNRAQGNLQCLSLIECPRITDDGLKHVLENNPRLTKLSVPGCTRLSIE 60
           NEKITDD+LLQLTNRAQG LQCLSL+ECPRITDDGLK VLENNPR+TKLSVPGCTRLSIE
Sbjct: 252 NEKITDDVLLQLTNRAQGTLQCLSLVECPRITDDGLKQVLENNPRITKLSVPGCTRLSIE 311

Query: 61  GIVTSLKAFRSMGTQGVKHLRIGGLYGVTQKHFEELKFLLGSDNHMQQNTYKPHYYHRGN 120
           GIV+SLKA ++MGTQ VKHLRIGG+YGVTQ+HFEELKFLLG+D HMQQN +KPH+YHR N
Sbjct: 312 GIVSSLKALKAMGTQRVKHLRIGGIYGVTQEHFEELKFLLGTDGHMQQNAHKPHFYHREN 371

Query: 121 FYLSCE 126
            YLSCE
Sbjct: 372 LYLSCE 377


>29692.m000519 conserved hypothetical protein
          Length = 332

 Score = 79.3 bits (194), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 72/119 (60%), Gaps = 7/119 (5%)

Query: 1   NEKITDDILLQLTNRAQGNLQCLSLIECPRITDDGLKHVLENNPRLTKLSVPGCTRLSIE 60
           + +++D+IL+++ ++A   L+ L L  C +ITDDGL+ V+E NP + KL +P CT L+ E
Sbjct: 92  SSRLSDEILMKIASKANCRLRTLILRNCTKITDDGLEKVIEKNPYINKLHLPACTGLTPE 151

Query: 61  GIVTSLKAFRSMGTQGVKHLRIGGLYGVTQKHFEELKFLLGSDNHMQQNTYKPHY--YH 117
           GI+ ++K   S     +K L+I G+Y + ++H E L   L     M  + +KP +  YH
Sbjct: 152 GIIKAVKIL-SQHPNSLKSLQINGIYNLKKQHLETLYSYL----QMNPSQHKPQHILYH 205