Jatropha Genome Database

JcCB0477071.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0477071.10 + phase: 1 /partial
         (231 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29848.m004540 DNA-directed RNA polymerase subunit, putative           325   1e-89
29851.m002412 DNA-directed RNA polymerase II subunit, putative         91   3e-19
29686.m000857 DNA-directed RNA polymerase III subunit, putative        72   3e-13

>29848.m004540 DNA-directed RNA polymerase subunit, putative
          Length = 1203

 Score =  325 bits (833), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 168/229 (73%), Positives = 181/229 (79%), Gaps = 4/229 (1%)

Query: 7   DSRF---STQGRLEMLDTH-GENCGLVKNLAITGLVSTEILEPLIDILFDCGMDKLVDDT 62
           D+RF   S  GR+  L T  GENCGLVKNLA TGLVS  ILEPLID L   GM+K+ +D+
Sbjct: 528 DARFPHPSHWGRVCFLSTPDGENCGLVKNLATTGLVSVNILEPLIDKLIARGMEKVPEDS 587

Query: 63  HTKLDEKYKVFLNGEWVGVCEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADA 122
           H+ LDEK KVFLNGEWVGVCEDS LFVAE            QVEIKRDEQQ+EVRIF+DA
Sbjct: 588 HSDLDEKDKVFLNGEWVGVCEDSRLFVAELRRLRRRKKLPQQVEIKRDEQQQEVRIFSDA 647

Query: 123 GRILRPLLVVENLHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVD 182
           GRILRPLLVV+NLHKI+AFKGGN TFQSLLDK            DCSTAWGIKFL++GVD
Sbjct: 648 GRILRPLLVVQNLHKIEAFKGGNCTFQSLLDKGIIEFVGTEEEEDCSTAWGIKFLLSGVD 707

Query: 183 KKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
            KQ LKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG
Sbjct: 708 GKQSLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 756


>29851.m002412 DNA-directed RNA polymerase II subunit, putative
          Length = 1194

 Score = 91.3 bits (225), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 110/226 (48%), Gaps = 21/226 (9%)

Query: 23  GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
           G+ CGLVKNLA+   ++      P+++ L + G +   + +   + +  K+F+NG WVG+
Sbjct: 523 GQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGI 582

Query: 82  CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVE-------- 133
             D ++ V              +V + RD + KE+RI+ D GR  RPL +VE        
Sbjct: 583 HRDPDMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKK 642

Query: 134 -NLHKIK----AFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLV-AGVDKKQPL 187
            ++H ++    + +GG   +  L+ K                +  I  LV A ++ ++  
Sbjct: 643 KDIHALQQRESSEEGG---WHDLVAKGFIEYIDTEEEETTMISMTIHDLVQARINPEEAY 699

Query: 188 K--YTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
              YTHCE+  S +LG+   IIPF +H+ + R  YQ+    +QA+G
Sbjct: 700 SDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMG 744


>29686.m000857 DNA-directed RNA polymerase III subunit, putative
          Length = 1139

 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 98/221 (44%), Gaps = 22/221 (9%)

Query: 22  HGENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLV----DDTHTKLDEKYKVFLNG 76
            GE CGLVKNLA+   V+T+  E PLI + +  G++ L     ++ HT     + V  NG
Sbjct: 487 EGEACGLVKNLALMTHVTTDDEEGPLISLCYCLGVEDLELLSGEELHTP--NSFLVIFNG 544

Query: 77  EWVGVCEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN-- 134
             +G       FV               V +  +E+Q+ V + +D GR+ RPL++ +   
Sbjct: 545 LILGKHRRPQYFVNSMRKLRRAGKIGEFVSVFVNEKQRAVYLASDGGRVCRPLVIADRGV 604

Query: 135 ----LHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVDKKQPLKYT 190
                H +K  + G  TF   L              +         LVA  + +   + T
Sbjct: 605 SRIKEHHMKELRDGVRTFDDFLRDGLIEYLDVNEENNA--------LVALYEGEATPETT 656

Query: 191 HCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
           H E++   +LG+  G+IPF +H+ + R  YQ     +QA+G
Sbjct: 657 HIEIEPFTILGVCAGLIPFPHHNQSPRNTYQC-AMGKQAMG 696