Jatropha Genome Database

JcCB0473701.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0473701.10 + phase: 1 /partial
         (63 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29904.m002984 3-ketoacyl-CoA thiolase B, putative                     122   4e-29
30204.m001789 3-ketoacyl-CoA thiolase B, putative                     105   3e-24

>29904.m002984 3-ketoacyl-CoA thiolase B, putative
          Length = 460

 Score =  122 bits (306), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 57/63 (90%), Positives = 59/63 (93%)

Query: 1   ARCVATLLHEMKRRGRDCRFGVVSMCIGTGMGAAAVFERGDGCDELCNARKAETDKLLSK 60
           ARCVATLLHEMKRRGRDCRFGVVSMCIGTGMGAAAVFERGD CD+LCNARK ET  LLSK
Sbjct: 398 ARCVATLLHEMKRRGRDCRFGVVSMCIGTGMGAAAVFERGDACDDLCNARKVETSNLLSK 457

Query: 61  DAL 63
           DA+
Sbjct: 458 DAM 460


>30204.m001789 3-ketoacyl-CoA thiolase B, putative
          Length = 467

 Score =  105 bits (263), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 51/62 (82%), Positives = 54/62 (87%)

Query: 1   ARCVATLLHEMKRRGRDCRFGVVSMCIGTGMGAAAVFERGDGCDELCNARKAETDKLLSK 60
           ARCVATLLHEMKR G+DCRFGV+SMCIGTGMGAAAVFERGD  DELCNAR    + LLSK
Sbjct: 405 ARCVATLLHEMKRCGKDCRFGVISMCIGTGMGAAAVFERGDCVDELCNARPVNGNDLLSK 464

Query: 61  DA 62
           DA
Sbjct: 465 DA 466