Jatropha Genome Database

JcCB0469141.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0469141.10 + phase: 2 /pseudo/partial
         (99 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29904.m002961 WD-repeat protein, putative                              75   5e-15
30204.m001768 WD-repeat protein, putative                              49   5e-07

>29904.m002961 WD-repeat protein, putative
          Length = 782

 Score = 75.5 bits (184), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 35/39 (89%), Positives = 37/39 (94%)

Query: 1   LKHSNPMDSETSQPLLDARMCLLKPATNHPGQLVQGNSG 39
           +KHSNPMDSETSQPLLD+RM LLK ATNHPGQLVQGNSG
Sbjct: 145 MKHSNPMDSETSQPLLDSRMPLLKQATNHPGQLVQGNSG 183


>30204.m001768 WD-repeat protein, putative
          Length = 766

 Score = 48.9 bits (115), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 25/40 (62%), Positives = 29/40 (72%), Gaps = 1/40 (2%)

Query: 1   LKHSNPMDSETSQPLLDA-RMCLLKPATNHPGQLVQGNSG 39
           +KH + MDSETS  L+D  R+ L K AT H GQLVQGNSG
Sbjct: 148 IKHPHSMDSETSPALIDPNRVALFKSATGHQGQLVQGNSG 187