Jatropha Genome Database

JcCB0469081.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0469081.10 + phase: 0 /pseudo/partial
         (207 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29739.m003743 Adipocyte plasma membrane-associated protein, puta...   167   3e-42
28094.m000175 strictosidine synthase, putative                         49   1e-06

>29739.m003743 Adipocyte plasma membrane-associated protein,
           putative
          Length = 356

 Score =  167 bits (423), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 82/103 (79%), Positives = 90/103 (87%)

Query: 102 NINLAPDGSFWIGLLQLTSDWLKFVHTSKLSKHLVASFPKLIELVTGLRKKAMVVNVAAD 161
           NINLAPDGSFWI LLQ+ +D L+FVHTSK SKHLVASFPKLIELV G+ K AMVVNVAAD
Sbjct: 251 NINLAPDGSFWICLLQVAADGLEFVHTSKASKHLVASFPKLIELVNGVEKNAMVVNVAAD 310

Query: 162 GRIIRMFDDPVGKVMSFVTSAFEFDGYLYLGSLNTNFIGKLPL 204
           G+I R FDDP GKV+SFVTSA EFDG+LYLGSL  NF+GKLPL
Sbjct: 311 GKITRKFDDPDGKVVSFVTSAVEFDGHLYLGSLKNNFVGKLPL 353


>28094.m000175 strictosidine synthase, putative
          Length = 372

 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 53/108 (49%), Gaps = 14/108 (12%)

Query: 102 NINLAPDGSFWIGL---------LQLTSDWLKFVHTSKLSKHLVASFPKLIELVTGLRKK 152
           NI     G FW+ L         L L++ W+      K       SF +L  L+ G +  
Sbjct: 266 NIRRNSKGEFWVALHAKEGFLAKLALSNSWI-----GKTLLKFPLSFKQLHSLLVGGKPH 320

Query: 153 AMVVNVAADGRIIRMFDDPVGKVMSFVTSAFEFDGYLYLGSLNTNFIG 200
           A  + ++ DG+I+++ +D  GK + F++   E DG L++GS+   F+G
Sbjct: 321 ATAIKLSGDGKIVQVLEDCDGKRLRFISEVEEKDGKLWIGSVLMPFLG 368