Jatropha Genome Database

JcCB0467621.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0467621.10 - phase: 1 /TE/pseudo/partial
         (119 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29670.m000148 kinesin light chain, putative                           137   2e-33

>29670.m000148 kinesin light chain, putative
          Length = 503

 Score =  137 bits (344), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 67/98 (68%), Positives = 73/98 (74%)

Query: 1   IILGENDNAVFASAXXXXXXXXXXXXXXXXXLRKIEDGSVISNEHTSKWRIFTDNGREYF 60
           IILG N N V A+A                 LRKIEDGSVISN HTSKWRIFTDNGR YF
Sbjct: 18  IILGINANPVLANAPNESNSETESEGANVIGLRKIEDGSVISNIHTSKWRIFTDNGRAYF 77

Query: 61  VQGKLEQAEKFFFSALEEAKKGFGDRDPHVASACNNLG 98
           +QGKL++AEKFF SALEEAKKGFG+R+PHVASACNNL 
Sbjct: 78  LQGKLDEAEKFFLSALEEAKKGFGNREPHVASACNNLA 115