Jatropha Genome Database

JcCB0466631.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0466631.20 - phase: 1 /TE/partial
         (602 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30170.m014390 brca1 interacting protein helicase 1 brip1, putative    395   e-110

>30170.m014390 brca1 interacting protein helicase 1 brip1, putative
          Length = 1248

 Score =  395 bits (1015), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 212/378 (56%), Positives = 252/378 (66%), Gaps = 47/378 (12%)

Query: 61   RCSETSSQEDPEVTFVKETLSTGCNETTTTTASFSMDKSPNLNLSPPSAEFIDQVSFHSA 120
            R  E SSQEDPE+T VKET   G N TT ++ SFS D + +L +   S E  DQ S +S 
Sbjct: 877  RFLEESSQEDPEMTLVKETPGMGFNGTTASSGSFSKDGNSSLTMIQASVEHTDQESSYSV 936

Query: 121  CLTNASRASDRAQCSGVATPRKDSTANNCSLIPEAESTLNLSVNSHTQKKRKSVGSPLID 180
             LTNAS+   +A CS   TP+KD  AN CSLIPEAESTLNLSVNSHTQKKR+ +G P I+
Sbjct: 937  SLTNASKDPGKACCSLAVTPKKDFNANTCSLIPEAESTLNLSVNSHTQKKRQPIGLPFIN 996

Query: 181  VKKQNDSPNAQTSGCVGFIENTIAIKDASRRIEFDFATNSAQSLSIRLKKPQILPLDNSA 240
            + +  DSP+ ++ GC     +T+A KDA+RRIEFD AT+SA+  S+  K P++LP +N A
Sbjct: 997  LVEGPDSPDMESPGCFRSTTDTMASKDANRRIEFDLATDSAEHQSMESKAPRVLPTNNCA 1056

Query: 241  PPS--SDPVMDKKLRISCSLCKSPLGRPENQLYVRCSLTSSSKVHLRSLVKERLERCTEN 298
            P S  SDPVMD+KL+ISCSLCKSPLG PENQLYVRCSLTS+SK+HL SL KER E C+ N
Sbjct: 1057 PSSINSDPVMDQKLQISCSLCKSPLGLPENQLYVRCSLTSTSKIHLTSLGKERFEYCSNN 1116

Query: 299  TSTCIPVLMTDITSVDQRLCNSNLEDKPGRGVWCEEDGCVFSSILCPFCSTFNCLGVQIM 358
            T + +PVLM DI SVDQRL N  L+D PGRGVWCEEDGCVF+SI CPFCS+ NCLGVQIM
Sbjct: 1117 TKS-VPVLMADIASVDQRLYNITLKDNPGRGVWCEEDGCVFNSIYCPFCSSSNCLGVQIM 1175

Query: 359  AADASNVQLLNKVCFNERMYFFDASNXDQXXXXXXXXXXXXXXXXXXXXXXXXNMQILFY 418
            A DASNVQLLNK+                                            LFY
Sbjct: 1176 ATDASNVQLLNKI--------------------------------------------LFY 1191

Query: 419  FDHLEIQDLEGSVDKGQK 436
            FD LEIQ+LE S D+  K
Sbjct: 1192 FDGLEIQNLEASTDRASK 1209



 Score = 75.9 bits (185), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 33/35 (94%), Positives = 33/35 (94%)

Query: 568  HSPSMDKIAAFNSIDRFSYSPQQNSGGWRTTRPKV 602
            HSPSMDK AAFNSIDRFSYSP QNSGGWRTTRPKV
Sbjct: 1214 HSPSMDKTAAFNSIDRFSYSPHQNSGGWRTTRPKV 1248