Jatropha Genome Database

JcCB0466631.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0466631.10 + phase: 0 /partial
         (84 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30170.m014389 DNA binding protein, putative                            68   9e-13

>30170.m014389 DNA binding protein, putative
          Length = 231

 Score = 68.2 bits (165), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 43/98 (43%), Positives = 54/98 (55%), Gaps = 26/98 (26%)

Query: 1   NRRARSKRKQAALPTLT-----NTGESQAE--------------PAEDKNTNQDDTIAQM 41
           NRRARSKRKQ+AL         N  ESQ E               A++K T       Q+
Sbjct: 133 NRRARSKRKQSALAPSPPPPPPNNRESQVEVEPEPEPEPELELETAKEKRT-------QL 185

Query: 42  DESLEFMVNDMYFQNPEIQGIEQLIGRPEVTINYKPHW 79
           D++L FMVN MYF  PEI GI+QLIG+ EV ++Y  +W
Sbjct: 186 DDNLAFMVNHMYFHTPEIGGIDQLIGKAEVPMSYDSYW 223