Jatropha Genome Database

JcCB0464111.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0464111.10 - phase: 0 /partial
         (61 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

32915.m000014 triosephosphate isomerase, putative                      82   5e-17
27383.m000156 triosephosphate isomerase, putative                      81   1e-16
29711.m000323 triosephosphate isomerase, putative                      66   3e-12

>32915.m000014 triosephosphate isomerase, putative
          Length = 70

 Score = 82.0 bits (201), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 39/54 (72%), Positives = 43/54 (79%)

Query: 7  ETYFCTSYLTSGSVNGGNCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVKKS 60
          E    T  +  GSVNG NCKELA QPD+DGFLVGGASLKPEF++IIKSA VKKS
Sbjct: 16 EVAASTRIIYGGSVNGANCKELAGQPDLDGFLVGGASLKPEFVNIIKSAAVKKS 69


>27383.m000156 triosephosphate isomerase, putative
          Length = 254

 Score = 80.9 bits (198), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/49 (79%), Positives = 41/49 (83%)

Query: 12  TSYLTSGSVNGGNCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVKKS 60
           T  +  GSV   NCKELAAQPDVDGFLVGGASLKPEFI+IIKSA VKKS
Sbjct: 205 TRIIYGGSVTATNCKELAAQPDVDGFLVGGASLKPEFIEIIKSAEVKKS 253


>29711.m000323 triosephosphate isomerase, putative
          Length = 313

 Score = 66.2 bits (160), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/49 (69%), Positives = 36/49 (73%), Gaps = 1/49 (2%)

Query: 12  TSYLTSGSVNGGNCKELAAQPDVDGFLVGGASLK-PEFIDIIKSATVKK 59
           T  +  GSVNGGNC ELA Q D+DGFLVGGASLK PEF  II S T KK
Sbjct: 262 TRIIYGGSVNGGNCAELAKQEDIDGFLVGGASLKGPEFATIINSVTSKK 310