Jatropha Genome Database

JcCB0463411.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0463411.10 - phase: 2 /pseudo/partial
         (86 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28320.m001111 conserved hypothetical protein                           91   1e-19
29848.m004648 conserved hypothetical protein                           91   1e-19
29680.m001658 conserved hypothetical protein                           88   1e-18

>28320.m001111 conserved hypothetical protein
          Length = 130

 Score = 90.9 bits (224), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 42/49 (85%), Positives = 44/49 (89%)

Query: 31 KKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTIAEILKIMGWLLRR 79
          KKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVT+AEILK  G  + R
Sbjct: 29 KKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTVAEILKNNGLAIER 77


>29848.m004648 conserved hypothetical protein
          Length = 128

 Score = 90.5 bits (223), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 42/49 (85%), Positives = 44/49 (89%)

Query: 31 KKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTIAEILKIMGWLLRR 79
          KKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTIAEILK  G  + +
Sbjct: 29 KKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTIAEILKNNGLAIEK 77


>29680.m001658 conserved hypothetical protein
          Length = 153

 Score = 87.8 bits (216), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 42/54 (77%), Positives = 44/54 (81%)

Query: 31  KKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTIAEILKIMGWLLRRVRLLS 84
           KKPLFFYVNLAKRY+QQHNEVELSALGMAI TVVTIAEILK  G    +  L S
Sbjct: 53  KKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTS 106