Jatropha Genome Database

JcCB0462781.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0462781.10 - phase: 0 /partial
         (119 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29905.m000446 conserved hypothetical protein                          112   6e-26
30138.m003958 conserved hypothetical protein                           67   2e-12

>29905.m000446 conserved hypothetical protein
          Length = 1047

 Score =  112 bits (279), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 56/83 (67%), Positives = 66/83 (79%), Gaps = 2/83 (2%)

Query: 1  MPAKFIHNLPDENPDLQKQIGCMNGILQLFDRHHFLGGGRRAIGQNRKSLPSSGQSGNDS 60
          M AKF+H L DENPDLQKQIGCMNGI QLF+RHHFL G R+  G N+K LP SGQ+GN +
Sbjct: 1  MSAKFVHTLSDENPDLQKQIGCMNGIFQLFERHHFLSGRRQITGHNQKRLP-SGQNGNYN 59

Query: 61 KEQKNAAQNTTEKNQKKAIKEKQ 83
           E KNA+Q  T+K+ KKA+KEKQ
Sbjct: 60 IEPKNASQK-TDKDHKKAVKEKQ 81


>30138.m003958 conserved hypothetical protein
          Length = 1094

 Score = 66.6 bits (161), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 28/40 (70%), Positives = 31/40 (77%)

Query: 1  MPAKFIHNLPDENPDLQKQIGCMNGILQLFDRHHFLGGGR 40
          M AK +H+L D+N DLQKQIGCM GI QLFDRHH L G R
Sbjct: 1  MAAKLLHSLADDNSDLQKQIGCMTGIFQLFDRHHALTGRR 40