Jatropha Genome Database

JcCB0461591.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0461591.10 + phase: 2 /partial
         (110 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29805.m001503 sensory transduction histidine kinase, putative         102   3e-23
30130.m000280 sensory transduction histidine kinase, putative          78   8e-16
29758.m000642 Two-component response regulator ARR2, putative          60   2e-10
30076.m004450 sensory transduction histidine kinase, putative          49   7e-07

>29805.m001503 sensory transduction histidine kinase, putative
          Length = 762

 Score =  102 bits (255), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 63/107 (58%), Positives = 67/107 (62%), Gaps = 8/107 (7%)

Query: 1   HCGSSNMLGGPVEGNGGNYXXXXXXXXXXXXXXXXXX----XXTAVNAGGTNMESDNGIA 56
           HCGSSN+LGGP+EGNGGNY                        TAVNAGGTN+ESDNGI 
Sbjct: 626 HCGSSNVLGGPLEGNGGNYSINGSASGSNHGSNHVSNGQNGSSTAVNAGGTNVESDNGIG 685

Query: 57  GKTXXXXXXXXXXXXXNRIDQNKFSQREAALTKFRQKRKERCFRKKV 103
           GK+             NR DQNKFSQRE ALTKFRQKRKERCFRKKV
Sbjct: 686 GKSGSGDGSGEG----NRGDQNKFSQREVALTKFRQKRKERCFRKKV 728


>30130.m000280 sensory transduction histidine kinase, putative
          Length = 807

 Score = 78.2 bits (191), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 44/112 (39%), Positives = 60/112 (53%), Gaps = 20/112 (17%)

Query: 1   HCGSSNMLGGPVEGNGGNYXXXXXXXXXXXXXXXXXXXXTAVNAGGTNMESDN------- 53
            CGSSN++GGP EGN GNY                    TA++   TN+ES+N       
Sbjct: 628 QCGSSNVIGGPTEGNAGNYSMNGSASGSNHGSNGQNGSNTALHTELTNIESNNTAGANHG 687

Query: 54  --GIAGKTXXXXXXXXXXXXXNRIDQNKFSQREAALTKFRQKRKERCFRKKV 103
             G++G+              N +D+++ +QREAAL+KFRQKRKERCF K+V
Sbjct: 688 AGGMSGRISG-----------NAVDEDRLAQREAALSKFRQKRKERCFEKRV 728


>29758.m000642 Two-component response regulator ARR2, putative
          Length = 659

 Score = 60.1 bits (144), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/101 (40%), Positives = 47/101 (46%), Gaps = 5/101 (4%)

Query: 3   GSSNMLGGPVEGNGGNYXXXXXXXXXXXXXXXXXXXXTAVNAGGTNMESDNGIAGKTXXX 62
           GSSNML   ++   GNY                     A+N   TN E DNG A K    
Sbjct: 530 GSSNMLSVHIDS-VGNYRMNGGASGSDHGSNGLNESSVALNLKKTNAERDNGAAEKAGAA 588

Query: 63  XXXXXXXXXXNRIDQNKFSQREAALTKFRQKRKERCFRKKV 103
                       +D N+ +QREAAL KFRQKRKERCF KKV
Sbjct: 589 CGTGSRTA----VDHNRSAQREAALNKFRQKRKERCFEKKV 625


>30076.m004450 sensory transduction histidine kinase, putative
          Length = 697

 Score = 48.5 bits (114), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 21/29 (72%), Positives = 26/29 (89%)

Query: 75  IDQNKFSQREAALTKFRQKRKERCFRKKV 103
           +D ++FSQREAALTKFR KRK+RC+ KKV
Sbjct: 633 MDSDRFSQREAALTKFRLKRKDRCYEKKV 661