Jatropha Genome Database

JcCB0461271.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0461271.10 + phase: 0 /partial
         (136 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30147.m014310 conserved hypothetical protein                          178   6e-46

>30147.m014310 conserved hypothetical protein
          Length = 390

 Score =  178 bits (452), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 88/136 (64%), Positives = 101/136 (74%), Gaps = 3/136 (2%)

Query: 1   METLIKSTFPYFSKYRNIPNIKSVKPLKFSIKPPPPDFDFRSEILQQSRTTIAKSYPQLL 60
           M+TL+ STFP FSKY N P  K  KPLK SIKPPPPDFDFRSEILQ+SRTTIAK++P LL
Sbjct: 1   MDTLLNSTFPIFSKYPNFPISKPAKPLKVSIKPPPPDFDFRSEILQESRTTIAKNHPDLL 60

Query: 61  DLADTGNLVVIEKQLFGPVPAWRTEFVEPDAIWLVGTTHICXXXXXXXXXXXXXXXXXXX 120
           DLAD+GNL++IEK+LFGPVPAWRTEFVEP+AIWLVGT+HI                    
Sbjct: 61  DLADSGNLILIEKRLFGPVPAWRTEFVEPEAIWLVGTSHISTESATQVERVVRAVKPDNV 120

Query: 121 XXELCKSRQISSSLFL 136
             ELC+SRQ+   LFL
Sbjct: 121 VVELCRSRQV---LFL 133